SitesBLAST – Find functional sites

 

SitesBLAST

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Comparing 70 a.a. (MSDKMKGQVK...) to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree

Found 20 (the maximum) hits to proteins with known functional sites (download)

7ot5B Cold shock protein CspB (see paper)
74% identity, 94% coverage: 5:70/70 of query aligns to 1:66/66 of 7ot5B

query
sites
7ot5B
M
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M
K
 
T
G
 
G
Q
 
I
V
 
V
K
|
K
W
|
W
F
 
F
N
 
N
E
 
A
S
 
D
K
 
K
G
 
G
F
 
F
G
 
G
F
 
F
I
 
I
T
 
T
P
 
P
A
 
D
D
 
D
G
 
G
S
 
S
K
|
K
D
|
D
V
 
V
F
|
F
V
 
V
H
 
H
F
 
F
S
 
S
A
 
A
I
 
I
Q
 
Q
G
 
N
N
 
D
G
 
G
F
 
Y
K
 
K
T
 
S
L
 
K
A
 
D
E
 
E
G
 
G
Q
|
Q
N
 
K
V
 
V
E
x
S
F
|
F
T
 
T
I
 
I
E
|
E
N
 
S
G
 
G
A
|
A
K
|
K
G
x
A
P
 
P
A
 
A
A
 
A
A
x
G
N
|
N
V
|
V
T
 
T
A
x
S
L
|
L

2es2A Crystal structure analysis of the bacillus subtilis cold shock protein bs-cspb in complex with hexathymidine (see paper)
67% identity, 91% coverage: 5:68/70 of query aligns to 2:64/67 of 2es2A

query
sites
2es2A
M
 
L
K
x
E
G
 
G
Q
 
K
V
 
V
K
|
K
W
|
W
F
|
F
N
 
N
E
 
S
S
 
E
K
 
K
G
 
G
F
|
F
G
 
G
F
|
F
I
 
I
T
 
-
P
 
E
A
 
V
D
 
E
G
 
G
S
 
Q
K
 
D
D
|
D
V
 
V
F
|
F
V
 
V
H
|
H
F
 
F
S
 
S
A
 
A
I
 
I
Q
 
Q
G
 
G
N
 
E
G
 
G
F
 
F
K
 
K
T
 
T
L
 
L
A
 
E
E
|
E
G
 
G
Q
 
Q
N
 
A
V
 
V
E
 
S
F
 
F
T
 
E
I
 
I
E
 
V
N
 
E
G
 
G
A
 
N
K
x
R
G
 
G
P
 
P
A
x
Q
A
 
A
A
 
A
N
 
N
V
 
V
T
 
T

Sites not aligning to the query:

3pf4B Crystal structure of bs-cspb in complex with r(gucuuua) (see paper)
67% identity, 91% coverage: 5:68/70 of query aligns to 2:64/66 of 3pf4B

query
sites
3pf4B
M
 
L
K
 
E
G
 
G
Q
 
K
V
 
V
K
|
K
W
|
W
F
 
F
N
|
N
E
 
S
S
 
E
K
 
K
G
 
G
F
|
F
G
 
G
F
|
F
I
 
I
T
 
-
P
 
E
A
 
V
D
 
E
G
 
G
S
 
Q
K
 
D
D
|
D
V
 
V
F
|
F
V
 
V
H
|
H
F
 
F
S
 
S
A
 
A
I
 
I
Q
 
Q
G
 
G
N
 
E
G
 
G
F
 
F
K
 
K
T
 
T
L
 
L
A
 
E
E
 
E
G
 
G
Q
 
Q
N
 
A
V
 
V
E
 
S
F
 
F
T
 
E
I
 
I
E
 
V
N
 
E
G
 
G
A
 
N
K
 
R
G
 
G
P
 
P
A
 
Q
A
 
A
A
 
A
N
 
N
V
 
V
T
 
T

A0R5E1 Probable cold shock protein A from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
58% identity, 93% coverage: 6:70/70 of query aligns to 3:67/67 of A0R5E1

query
sites
A0R5E1
K
 
Q
G
 
G
Q
 
T
V
 
V
K
 
K
W
 
W
F
 
F
N
 
N
E
 
A
S
 
E
K
 
K
G
 
G
F
 
F
G
 
G
F
 
F
I
 
I
T
 
A
P
 
P
A
 
E
D
 
D
G
 
G
S
 
S
K
 
A
D
 
D
V
 
V
F
 
F
V
 
V
H
 
H
F
 
Y
S
 
T
A
 
E
I
 
I
Q
 
Q
G
 
G
N
 
S
G
 
G
F
 
F
K
 
R
T
 
T
L
 
L
A
 
E
E
 
E
G
 
N
Q
 
Q
N
x
K
V
 
V
E
 
E
F
 
F
T
 
E
I
 
V
E
 
G
N
 
Q
G
 
S
A
 
P
K
 
K
G
 
G
P
 
P
A
 
Q
A
 
A
A
 
T
N
 
G
V
 
V
T
 
R
A
 
T
L
 
I

2haxA Crystal structure of bacillus caldolyticus cold shock protein in complex with hexathymidine (see paper)
63% identity, 93% coverage: 6:70/70 of query aligns to 3:66/66 of 2haxA

query
sites
2haxA
K
 
R
G
 
G
Q
 
K
V
 
V
K
 
K
W
|
W
F
 
F
N
|
N
E
x
N
S
x
E
K
|
K
G
|
G
F
x
Y
G
 
G
F
|
F
I
 
I
T
 
-
P
 
E
A
 
V
D
 
E
G
 
G
S
 
G
K
 
S
D
|
D
V
 
V
F
|
F
V
 
V
H
|
H
F
|
F
S
 
T
A
 
A
I
 
I
Q
 
Q
G
 
G
N
 
E
G
 
G
F
|
F
K
|
K
T
 
T
L
 
L
A
 
E
E
 
E
G
 
G
Q
 
Q
N
 
E
V
 
V
E
 
S
F
 
F
T
 
E
I
 
I
E
 
V
N
 
Q
G
 
G
A
 
N
K
x
R
G
 
G
P
|
P
A
x
Q
A
 
A
A
 
A
N
 
N
V
 
V
T
 
V
A
 
K
L
 
L

1c9oA Crystal structure analysis of the bacillus caldolyticus cold shock protein bc-csp (see paper)
63% identity, 93% coverage: 6:70/70 of query aligns to 3:66/66 of 1c9oA

query
sites
1c9oA
K
 
R
G
 
G
Q
 
K
V
 
V
K
 
K
W
 
W
F
 
F
N
 
N
E
 
N
S
 
E
K
 
K
G
 
G
F
 
Y
G
 
G
F
 
F
I
 
I
T
 
-
P
 
E
A
x
V
D
 
E
G
 
G
S
x
G
K
 
S
D
 
D
V
 
V
F
 
F
V
 
V
H
 
H
F
 
F
S
 
T
A
 
A
I
 
I
Q
 
Q
G
 
G
N
 
E
G
 
G
F
 
F
K
 
K
T
 
T
L
 
L
A
 
E
E
 
E
G
 
G
Q
 
Q
N
 
E
V
 
V
E
 
S
F
 
F
T
 
E
I
 
I
E
 
V
N
 
Q
G
 
G
A
 
N
K
 
R
G
 
G
P
 
P
A
 
Q
A
 
A
A
 
A
N
 
N
V
 
V
T
 
V
A
 
K
L
 
L

O54310 Cold shock-like protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
61% identity, 94% coverage: 5:70/70 of query aligns to 1:65/66 of O54310

query
sites
O54310
M
 
M
K
 
R
G
 
G
Q
 
K
V
 
V
K
 
K
W
 
W
F
 
F
N
x
D
E
 
S
S
 
K
K
 
K
G
 
G
F
 
Y
G
 
G
F
 
F
I
 
I
T
 
T
P
 
K
A
 
D
D
 
E
G
 
G
S
 
G
K
 
-
D
 
D
V
 
V
F
 
F
V
 
V
H
 
H
F
 
W
S
 
S
A
 
A
I
 
I
Q
 
E
G
 
M
N
 
E
G
 
G
F
 
F
K
 
K
T
 
T
L
 
L
A
 
K
E
 
E
G
 
G
Q
 
Q
N
 
V
V
 
V
E
 
E
F
 
F
T
 
E
I
 
I
E
 
Q
N
 
E
G
 
G
A
 
K
K
 
K
G
 
G
P
 
P
A
 
Q
A
 
A
A
 
A
N
x
H
V
 
V
T
 
K
A
 
V
L
 
V

6a6jA Crystal structure of zebra fish y-box protein1 (yb-1) cold-shock domain in complex with 6mer m5c RNA (see paper)
44% identity, 97% coverage: 1:68/70 of query aligns to 3:74/90 of 6a6jA

query
sites
6a6jA
M
 
I
S
 
A
D
 
T
K
 
K
M
 
V
K
 
L
G
 
G
Q
 
T
V
 
V
K
 
K
W
|
W
F
 
F
N
|
N
E
 
V
S
 
R
K
 
N
G
 
G
F
 
Y
G
 
G
F
|
F
I
 
I
T
 
N
P
 
R
A
 
N
D
 
D
G
 
T
S
 
K
K
 
E
D
 
D
V
 
V
F
|
F
V
 
V
H
|
H
F
 
Q
S
 
T
A
 
A
I
 
I
Q
 
K
G
 
K
N
 
N
G
 
N
-
 
P
-
 
R
-
 
K
-
 
Y
F
 
L
K
 
R
T
 
S
L
 
V
A
 
G
E
 
D
G
 
G
Q
 
E
N
 
T
V
 
V
E
 
E
F
 
F
T
 
D
I
 
V
E
 
V
N
 
E
G
 
G
A
x
E
K
|
K
G
|
G
P
x
A
A
x
E
A
 
A
A
 
A
N
 
N
V
 
V
T
 
T

6lmrA Solution structure of cold shock domain and ssdna complex (see paper)
44% identity, 97% coverage: 1:68/70 of query aligns to 5:76/90 of 6lmrA

query
sites
6lmrA
M
 
I
S
 
A
D
 
T
K
 
K
M
 
V
K
 
L
G
 
G
Q
 
T
V
 
V
K
 
K
W
|
W
F
 
F
N
|
N
E
 
V
S
x
R
K
 
N
G
 
G
F
 
Y
G
 
G
F
|
F
I
 
I
T
 
N
P
 
R
A
 
N
D
 
D
G
 
T
S
 
K
K
 
E
D
 
D
V
 
V
F
|
F
V
 
V
H
|
H
F
 
Q
S
 
T
A
 
A
I
 
I
Q
 
K
G
 
K
N
 
N
G
 
N
-
 
P
-
 
R
-
 
K
-
 
Y
F
 
L
K
 
R
T
 
S
L
 
V
A
 
G
E
 
D
G
 
G
Q
 
E
N
 
T
V
 
V
E
 
E
F
 
F
T
 
D
I
 
V
E
 
V
N
 
E
G
 
G
A
x
E
K
|
K
G
 
G
P
 
A
A
x
E
A
 
A
A
 
A
N
 
N
V
 
V
T
 
T

Sites not aligning to the query:

7f3iA Crystal structure of human ybx2 csd in complex with m5c RNA in space group p212121
43% identity, 97% coverage: 1:68/70 of query aligns to 6:77/93 of 7f3iA

query
sites
7f3iA
M
 
L
S
 
A
D
 
T
K
 
K
M
 
V
K
 
L
G
 
G
Q
 
T
V
 
V
K
|
K
W
|
W
F
 
F
N
|
N
E
x
V
S
x
R
K
x
N
G
 
G
F
x
Y
G
 
G
F
|
F
I
 
I
T
 
N
P
 
R
A
 
N
D
 
D
G
 
T
S
 
K
K
 
E
D
|
D
V
 
V
F
|
F
V
 
V
H
|
H
F
 
Q
S
 
T
A
 
A
I
 
I
Q
 
K
G
 
R
N
 
N
G
 
N
-
 
P
-
 
R
-
 
K
-
 
F
F
 
L
K
 
R
T
 
S
L
 
V
A
 
G
E
 
D
G
 
G
Q
 
E
N
 
T
V
 
V
E
 
E
F
 
F
T
 
D
I
 
V
E
 
V
N
 
E
G
 
G
A
 
E
K
|
K
G
|
G
P
 
A
A
 
E
A
 
A
A
 
T
N
 
N
V
 
V
T
 
T

Sites not aligning to the query:

B5DE31 Y-box-binding protein 1; YB-1; ZfY1; Y-box transcription factor from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
44% identity, 99% coverage: 1:69/70 of query aligns to 35:107/310 of B5DE31

query
sites
B5DE31
M
 
I
S
 
A
D
 
T
K
 
K
M
 
V
K
 
L
G
 
G
Q
 
T
V
 
V
K
 
K
W
|
W
F
|
F
N
|
N
E
x
V
S
x
R
K
x
N
G
 
G
F
 
Y
G
 
G
F
 
F
I
 
I
T
 
N
P
 
R
A
 
N
D
 
D
G
 
T
S
 
K
K
 
E
D
 
D
V
 
V
F
 
F
V
 
V
H
 
H
F
 
Q
S
 
T
A
 
A
I
 
I
Q
 
K
G
 
K
N
 
N
G
 
N
-
 
P
-
 
R
-
 
K
-
 
Y
F
 
L
K
 
R
T
 
S
L
 
V
A
 
G
E
 
D
G
 
G
Q
 
E
N
 
T
V
 
V
E
 
E
F
 
F
T
 
D
I
 
V
E
 
V
N
 
E
G
 
G
A
 
E
K
 
K
G
 
G
P
 
A
A
 
E
A
 
A
A
 
A
N
 
N
V
 
V
T
 
T
A
 
G

Q28618 Y-box-binding protein 1; YB-1; Nuclease-sensitive element-binding protein 1; Y-box transcription factor; p50 from Oryctolagus cuniculus (Rabbit) (see 2 papers)
44% identity, 97% coverage: 1:68/70 of query aligns to 55:126/324 of Q28618

query
sites
Q28618
M
 
I
S
 
A
D
 
T
K
 
K
M
 
V
K
 
L
G
 
G
Q
 
T
V
 
V
K
 
K
W
 
W
F
 
F
N
 
N
E
 
V
S
 
R
K
 
N
G
 
G
F
 
Y
G
 
G
F
 
F
I
 
I
T
 
N
P
 
R
A
 
N
D
 
D
G
 
T
S
 
K
K
 
E
D
 
D
V
 
V
F
 
F
V
 
V
H
 
H
F
 
Q
S
 
T
A
 
A
I
 
I
Q
 
K
G
 
K
N
 
N
G
 
N
-
 
P
-
 
R
-
 
K
-
 
Y
F
 
L
K
 
R
T
x
S
L
 
V
A
 
G
E
 
D
G
 
G
Q
 
E
N
 
T
V
 
V
E
 
E
F
 
F
T
 
D
I
 
V
E
 
V
N
 
E
G
 
G
A
 
E
K
 
K
G
 
G
P
 
A
A
 
E
A
 
A
A
 
A
N
 
N
V
 
V
T
 
T

Sites not aligning to the query:

P67809 Y-box-binding protein 1; YB-1; CCAAT-binding transcription factor I subunit A; CBF-A; DNA-binding protein B; DBPB; Enhancer factor I subunit A; EFI-A; Nuclease-sensitive element-binding protein 1; Y-box transcription factor from Homo sapiens (Human) (see 5 papers)
44% identity, 97% coverage: 1:68/70 of query aligns to 55:126/324 of P67809

query
sites
P67809
M
x
I
S
x
A
D
x
T
K
|
K
M
x
V
K
x
L
G
|
G
Q
x
T
V
|
V
K
|
K
W
|
W
F
|
F
N
|
N
E
x
V
S
x
R
K
x
N
G
|
G
F
 
Y
G
 
G
F
 
F
I
 
I
T
 
N
P
 
R
A
 
N
D
 
D
G
 
T
S
 
K
K
 
E
D
 
D
V
 
V
F
 
F
V
 
V
H
 
H
F
 
Q
S
 
T
A
 
A
I
 
I
Q
 
K
G
 
K
N
 
N
G
 
N
-
 
P
-
 
R
-
 
K
-
 
Y
F
 
L
K
 
R
T
x
S
L
 
V
A
 
G
E
 
D
G
 
G
Q
 
E
N
 
T
V
 
V
E
 
E
F
 
F
T
 
D
I
 
V
E
 
V
N
 
E
G
 
G
A
 
E
K
 
K
G
 
G
P
 
A
A
 
E
A
 
A
A
 
A
N
 
N
V
 
V
T
 
T

Sites not aligning to the query:

Q9Z2C8 Y-box-binding protein 2; FRGY2 homolog; Germ cell-specific Y-box-binding protein from Mus musculus (Mouse) (see paper)
47% identity, 89% coverage: 7:68/70 of query aligns to 98:163/360 of Q9Z2C8

query
sites
Q9Z2C8
G
|
G
Q
x
T
V
|
V
K
|
K
W
|
W
F
|
F
N
|
N
E
x
V
S
x
R
K
x
N
G
|
G
F
x
Y
G
|
G
F
|
F
I
|
I
T
x
N
P
x
R
A
x
N
D
|
D
G
x
T
S
x
K
K
x
E
D
|
D
V
|
V
F
|
F
V
|
V
H
|
H
F
x
Q
S
x
T
A
|
A
I
|
I
Q
x
K
G
x
R
N
|
N
G
x
N
-
x
P
-
x
R
-
x
K
-
x
F
F
x
L
K
x
R
T
x
S
L
x
V
A
x
G
E
x
D
G
|
G
Q
x
E
N
x
T
V
|
V
E
|
E
F
|
F
T
x
D
I
x
V
E
x
V
N
x
E
G
|
G
A
x
E
K
|
K
G
|
G
P
x
A
A
x
R
A
|
A
A
|
A
N
|
N
V
|
V
T
|
T

Sites not aligning to the query:

7oiiB Cold-shock DNA-binding protein family (see paper)
70% identity, 53% coverage: 7:43/70 of query aligns to 2:38/39 of 7oiiB

query
sites
7oiiB
G
 
G
Q
x
I
V
|
V
K
|
K
W
|
W
F
 
F
N
 
N
E
 
A
S
 
D
K
 
K
G
 
G
F
 
F
G
 
G
F
|
F
I
 
I
T
|
T
P
 
P
A
x
D
D
 
D
G
|
G
S
 
G
K
 
A
D
 
D
V
 
V
F
|
F
V
 
A
H
 
H
F
 
F
S
 
S
A
 
A
I
 
I
Q
 
Q
G
 
M
N
 
S
G
 
G
F
 
Y
K
 
R

Sites not aligning to the query:

4alpA The lin28b cold shock domain in complex with hexauridine (see paper)
43% identity, 90% coverage: 7:69/70 of query aligns to 9:78/87 of 4alpA

query
sites
4alpA
G
 
G
Q
 
H
V
 
C
K
 
K
W
 
W
F
 
F
N
 
N
E
 
V
S
 
R
K
 
M
G
|
G
F
 
F
G
 
G
F
 
F
I
 
I
T
 
S
-
 
M
-
 
T
-
 
S
-
 
R
-
 
E
-
 
G
-
 
S
P
 
P
A
 
L
D
 
E
G
 
N
S
 
P
K
 
V
D
 
D
V
 
V
F
 
F
V
 
V
H
 
H
F
x
Q
S
 
S
A
 
K
I
 
L
Q
 
Y
G
 
M
N
 
E
G
 
G
F
|
F
K
x
R
T
 
S
L
 
L
A
 
K
E
 
E
G
 
G
Q
 
E
N
 
P
V
 
V
E
 
E
F
 
F
T
 
T
I
 
F
E
 
K
N
 
K
G
 
S
A
 
S
K
 
K
G
 
G
P
 
F
A
 
E
A
 
S
A
 
L
N
 
R
V
 
V
T
 
T
A
 
G

4a75A The lin28b cold shock domain in complex with hexathymidine. (see paper)
43% identity, 90% coverage: 7:69/70 of query aligns to 11:80/89 of 4a75A

query
sites
4a75A
G
 
G
Q
 
H
V
 
C
K
|
K
W
|
W
F
 
F
N
|
N
E
 
V
S
 
R
K
 
M
G
 
G
F
|
F
G
 
G
F
|
F
I
 
I
T
 
S
-
 
M
-
 
T
-
 
S
-
 
R
-
 
E
-
 
G
-
 
S
P
 
P
A
 
L
D
 
E
G
 
N
S
 
P
K
 
V
D
|
D
V
 
V
F
|
F
V
 
V
H
|
H
F
 
Q
S
 
S
A
 
K
I
 
L
Q
 
Y
G
 
M
N
 
E
G
 
G
F
 
F
K
 
R
T
 
S
L
 
L
A
 
K
E
 
E
G
 
G
Q
 
E
N
 
P
V
 
V
E
 
E
F
 
F
T
 
T
I
 
F
E
 
K
N
 
K
G
x
S
A
 
S
K
|
K
G
 
G
P
x
F
A
 
E
A
 
S
A
 
L
N
 
R
V
 
V
T
 
T
A
 
G

Q6ZN17 Protein lin-28 homolog B; Lin-28B from Homo sapiens (Human) (see paper)
44% identity, 90% coverage: 7:69/70 of query aligns to 32:101/250 of Q6ZN17

query
sites
Q6ZN17
G
 
G
Q
 
H
V
 
C
K
 
K
W
 
W
F
 
F
N
 
N
E
 
V
S
 
R
K
 
M
G
 
G
F
 
F
G
 
G
F
 
F
I
 
I
T
 
S
-
 
M
-
 
I
-
 
N
-
 
R
-
 
E
-
 
G
-
 
S
P
 
P
A
 
L
D
 
D
G
 
I
S
 
P
K
 
V
D
 
D
V
 
V
F
 
F
V
 
V
H
 
H
F
 
Q
S
 
S
A
 
K
I
 
L
Q
 
F
G
 
M
N
 
E
G
 
G
F
 
F
K
 
R
T
 
S
L
 
L
A
 
K
E
 
E
G
 
G
Q
 
E
N
 
P
V
 
V
E
 
E
F
 
F
T
 
T
I
 
F
E
 
K
N
 
K
G
 
S
A
 
S
K
 
K
G
 
G
P
 
L
A
 
E
A
 
S
A
 
I
N
 
R
V
 
V
T
 
T
A
 
G

Sites not aligning to the query:

5udzA Human lin28a in complex with let-7f-1 microrna pre-element (see paper)
43% identity, 89% coverage: 7:68/70 of query aligns to 10:78/139 of 5udzA

query
sites
5udzA
G
 
G
Q
 
I
V
 
C
K
 
K
W
|
W
F
|
F
N
|
N
E
x
V
S
x
R
K
x
M
G
 
G
F
|
F
G
 
G
F
|
F
I
 
L
T
 
S
-
 
M
-
 
T
-
 
A
-
 
R
-
 
A
-
 
G
-
 
V
P
 
A
A
 
L
D
 
D
G
 
P
S
 
P
K
 
V
D
 
D
V
 
V
F
|
F
V
 
V
H
|
H
F
x
Q
S
 
S
A
 
K
I
 
L
Q
 
H
G
 
M
N
 
E
G
 
G
F
|
F
K
x
R
T
 
S
L
 
L
A
 
K
E
 
E
G
 
G
Q
 
E
N
 
A
V
 
V
E
 
E
F
 
F
T
 
T
I
 
F
E
 
K
N
 
K
G
 
S
A
 
A
K
|
K
G
|
G
P
 
L
A
x
E
A
 
S
A
 
I
N
 
R
V
 
V
T
 
T

Sites not aligning to the query:

Q9H9Z2 Protein lin-28 homolog A; Lin-28A; Zinc finger CCHC domain-containing protein 1 from Homo sapiens (Human) (see 2 papers)
43% identity, 89% coverage: 7:68/70 of query aligns to 42:110/209 of Q9H9Z2

query
sites
Q9H9Z2
G
 
G
Q
 
I
V
 
C
K
 
K
W
|
W
F
 
F
N
 
N
E
 
V
S
 
R
K
 
M
G
 
G
F
 
F
G
 
G
F
|
F
I
 
L
T
 
S
-
 
M
-
 
T
-
 
A
-
 
R
-
 
A
-
 
G
-
 
V
P
 
A
A
 
L
D
 
D
G
 
P
S
 
P
K
 
V
D
 
D
V
 
V
F
|
F
V
 
V
H
 
H
F
 
Q
S
 
S
A
 
K
I
 
L
Q
 
H
G
 
M
N
 
E
G
 
G
F
 
F
K
 
R
T
 
S
L
 
L
A
 
K
E
 
E
G
 
G
Q
 
E
N
 
A
V
 
V
E
 
E
F
 
F
T
 
T
I
 
F
E
 
K
N
 
K
G
 
S
A
 
A
K
 
K
G
 
G
P
 
L
A
 
E
A
 
S
A
 
I
N
 
R
V
 
V
T
 
T

Sites not aligning to the query:

Query Sequence

>70 a.a. (MSDKMKGQVK...)
MSDKMKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFTIENGAK
GPAAANVTAL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory