SitesBLAST

Q7WTT9 Arsenate respiratory reductase iron-sulfur subunit ArrB; Arsenate respiratory reductase small subunit; ARR small subunit from Shewanella sp. (strain ANA-3) (see paper)
37% identity, 75% coverage: 40:226/251 of query aligns to 2:234/234 of Q7WTT9

query
sites
Q7WTT9

R

R

Y

L

G

G

M

M

V

V

I

I

D

D

L

L

R

Q

R

K

C
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C

V

V

G

G

C
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C

Q

G

A

G

C
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C

T

S

V

L

A

A

C
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C

T

K

F

T

E

E

N

N

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N

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T

P

N

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D

G

G

Q

I

F

H

R

W

T

S

T

-

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-

Q

-

Y

H

E

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E

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G

A

T

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F

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-

K

F

Y

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C

N

N

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E

D

N

D

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A

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P

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C

I

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I

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C

P

P

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T

G

G

A

A

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F

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P

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Y

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N

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M

-

L

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K

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R

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G

-

A

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A

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M

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R

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F

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G

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D

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N

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I

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A

A

N

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T

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C12 (= C50) binding
C15 (= C53) binding
C18 (= C56) binding
C22 (= C60) binding
C57 (= C98) binding
C60 (= C101) binding
C65 (= C106) binding
C69 (= C110) binding
C89 (= C130) binding
C92 (= C133) binding
C95 (= C136) binding
C99 (= C140) binding
C164 (= C157) binding
C167 (= C160) binding
C179 (= C172) binding
C183 (= C176) binding

2ivfB Ethylbenzene dehydrogenase from aromatoleum aromaticum (see paper)
40% identity, 57% coverage: 77:220/251 of query aligns to 114:258/337 of 2ivfB

query
sites
2ivfB

Q

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Y

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D

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Q

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G

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G

A

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N

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P

A

F

F

F

L

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M

Y

L

L

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A

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L
x
M

C
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C

N
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N

H
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H

C
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E

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N

N

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P

P

A

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C

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I

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C

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T

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G

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A

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x
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D

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C

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A
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x
I

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x
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H

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I

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H

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A

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V

binding fe3-s4 cluster: C148 (= C110), T150 (= T112), I153 (≠ T115), C169 (= C130), K170 (≠ V131), G171 (= G132), H172 (≠ C133), R173 (≠ G134), H174 (≠ Y135), C175 (= C136), S193 (≠ A154)
binding protoporphyrin ix containing fe: T150 (= T112), K170 (≠ V131), H172 (≠ C133)
binding iron/sulfur cluster: M135 (≠ L97), C136 (= C98), N137 (= N99), H138 (= H100), C139 (= C101), P142 (= P104), C144 (= C106), V162 (= V123), C179 (= C140), A183 (= A144), I184 (≠ R145), K195 (= K156), C196 (= C157), I197 (≠ T158), L198 (≠ F159), C199 (= C160), N209 (≠ P170), C211 (= C172), C215 (= C176), V219 (≠ A180), R220 (= R181)

Sites not aligning to the query:

binding iron/sulfur cluster: 13, 14, 15, 16, 17, 19, 23, 27, 38, 39, 41

5ch7B Crystal structure of the perchlorate reductase pcrab - phe164 gate switch intermediate - from azospira suillum ps (see paper)
43% identity, 52% coverage: 90:220/251 of query aligns to 125:255/329 of 5ch7B

query
sites
5ch7B

A

S

F

F

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P

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C

N
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N

H

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C

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P

P

A

C
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C

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C

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N

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x
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-

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D

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G

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x
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C

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C

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P

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Y

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A

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K

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Y

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F

N

N

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A
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K

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G

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G

E

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G

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D

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L

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binding fe3-s4 cluster: C145 (= C110), I150 (≠ T115), C166 (= C130), K167 (≠ V131), G168 (= G132), A169 (≠ C133), Q170 (≠ G134), A171 (≠ Y135), C172 (= C136), A190 (= A154)
binding iron/sulfur cluster: P130 (= P95), C133 (= C98), N134 (= N99), C136 (= C101), P139 (= P104), C141 (= C106), C176 (= C140), C193 (= C157), G195 (≠ F159), C196 (= C160), C208 (= C172), C212 (= C176), V213 (= V177), G214 (= G178)

Sites not aligning to the query:

binding iron/sulfur cluster: 17, 18, 19, 20, 21, 23, 27, 31, 43, 45

P18776 Anaerobic dimethyl sulfoxide reductase chain B; DMSO reductase iron-sulfur subunit from Escherichia coli (strain K12) (see 2 papers)
36% identity, 71% coverage: 38:215/251 of query aligns to 2:191/205 of P18776

query
sites
P18776

S

T

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D

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C

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C

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N

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K

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A

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P

C102 (= C133) mutation C->F,S,W,Y: Loss of electron transfer from menaquinol to DMSO.

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

P0AAJ3 Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit; Anaerobic formate dehydrogenase iron-sulfur subunit; Formate dehydrogenase-N subunit beta; FDH-N subunit beta from Escherichia coli (strain K12) (see paper)
30% identity, 76% coverage: 31:220/251 of query aligns to 20:227/294 of P0AAJ3

query
sites
P0AAJ3

P

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G

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Y

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N

N

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N

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K

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K

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C39 (= C50) binding
C42 (= C53) binding
C45 (= C56) binding
C49 (= C60) binding
C100 (= C98) binding
C103 (= C101) binding
C108 (= C106) binding
C112 (= C110) binding
C133 (= C130) binding
C136 (= C133) binding
C139 (= C136) binding
C143 (= C140) binding
C160 (= C157) binding
C163 (= C160) binding
C175 (= C172) binding
C179 (= C176) binding

1kqfB Formate dehydrogenase n from e. Coli (see paper)
30% identity, 76% coverage: 31:220/251 of query aligns to 19:226/289 of 1kqfB

query
sites
1kqfB

P

P

A

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A

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A

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A

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E

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N

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N

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x
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P

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C

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C

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T

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-

A

G

G

A

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x
I

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G

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I

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V

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N

C
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C

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x
I

G
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G

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C

G
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G

Y
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Y

C
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C

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A

A

G

C
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C

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P

Y

F

D

N

A
x
I

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x
P

F

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N

N

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N

N

T

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A
x
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K

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C

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C

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C

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C

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x
P

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I

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D

T

-

K

-

E

-

M

L

L

N

E

D

L

P

A

H

E

S

Q

H

R

I

V

S

A

Q

K

L

L

L

K

K

A

A

R

N

G

Q

Y

A

E

D

H

I

A

K

G

V

V

L

Y

K

N

P

P

D

E

A

G

N

V

T

G

A

G

P

T

R

H

V

V

F

M

Y

Y

I

V

binding protoporphyrin ix containing fe: Y137 (= Y135)
binding iron/sulfur cluster: K31 (≠ M43), C38 (= C50), I39 (≠ V51), G40 (= G52), C41 (= C53), K42 (≠ Q54), C44 (= C56), C48 (= C60), N52 (vs. gap), T77 (= T74), M79 (≠ Q76), C99 (= C98), M100 (≠ N99), H101 (= H100), C102 (= C101), P105 (= P104), C107 (= C106), C111 (= C110), P112 (= P111), I117 (≠ T115), V125 (= V123), C132 (= C130), I133 (≠ V131), G134 (= G132), C135 (= C133), G136 (= G134), Y137 (= Y135), C138 (= C136), C142 (= C140), I146 (≠ A144), P147 (≠ R145), V156 (≠ A154), K158 (= K156), C159 (= C157), L161 (≠ F159), C162 (= C160), P172 (= P170), C174 (= C172), C178 (= C176), P179 (≠ V177), I183 (≠ R181)

Sites not aligning to the query:

binding protoporphyrin ix containing fe: 252

6f0kB Alternative complex iii (see paper)
30% identity, 76% coverage: 30:221/251 of query aligns to 711:949/961 of 6f0kB

query
sites
6f0kB

Q

Q

P

P

A

A

Q

F

T

Q

A

D

T

S

T

D

S
x
Y

K

Y

R

R

-

N

-

Q

Y

W

G

A

M

M

V

V

I

I

D

D

L

L

R

N

R

A

C
|
C

V
x
T

G
|
G

C
|
C

Q
x
N

A
|
A

C
|
C

T

I

V

V

A

A

C
|
C

T

D

F

S

E

E

N

N

L

N

P

I

P

P

L

M

-

V

-

G

-

K

-

N

-

E

-

V

G

G

Q

R

F

G

R

R

T

E

T

M

-

H

-
x
W

-

L

-

R

V
x
I

Q

D

Q

R

Y

Y

E

F

V

V

S

S

Q

D

Q

E

D

A

S

H

A

A

T

D

P

D

P

P

A

Q

F

I

L

V

M

V

L

Q

P

P

R

V

L

P

C
|
C

N
x
M

H
|
H

C
|
C

E

E

N

N

P

A

P
|
P

C
|
C

I

E

P

S

I

V

C
|
C

P

P

T
x
V

G

A

A

A

T

T

F

V

Q

H

R

S

P

P

D

D

G

G

I

L

V
x
N

V

E

V
x
M

N

V

N

Y

E
x
N

W
x
R

C
|
C

V
x
I

G
|
G

C

T

G

R

Y

Y

C
|
C

V

S

Q

N

A

N

C
|
C

P

P

Y

Y

D

K

A

V

R

R

F

R

I

F

N

N

-

W

-

F

-

N

-

W

-

V

-

K

-

T

-

L

-

P

-

I

-

Q

-

V

-

Q

-

M

-

A

-

Q

-

N

-

P

-

D

-

V

-

T

-

V

H

R

E

F

T

R

N

G

T

V

A
x
M

D

E

K

K

C
|
C

T

T

F
x
Y

C
|
C

A

V

H

Q

R

R

L

I

-

R

-

E

-

A

-

Q

-
x
R

-

Q

-

A

-
x
N

-

I

-

E

-

K

-

R

-

P

-

L

-

R

E

D

A

G

G

E

L

V

L

K

P

T

A
|
A

C
|
C

V

Q

E

Q

T

A

C
|
C

V

P

G

A

E

E

A

A

R

I

V

T

I

F

G

G

D

D

L

L

N

N

D

D

P

P

H

N

S

N

H

A

I

V

S

V

Q

K

L

-

L

Q

K

R

A

Q

N

N

Q

A

A

R

D

R

I

Y

K

E

V

M

L

L

K

A

P

A

D

-

A

L

N

N

T

V

A

K

P

P

R

R

V

T

F

S

Y

Y

I

L

G

A

binding fe3-s4 cluster: C803 (= C110), V805 (≠ T112), M818 (≠ V125), C823 (= C130), I824 (≠ V131), G825 (= G132), C829 (= C136), M869 (≠ A154)
binding heme c: Y719 (≠ S38), N821 (≠ E128), R822 (≠ W129), R884 (vs. gap), N887 (vs. gap)
binding iron/sulfur cluster: C733 (= C50), T734 (≠ V51), G735 (= G52), C736 (= C53), N737 (≠ Q54), A738 (= A55), C739 (= C56), C743 (= C60), W765 (vs. gap), I768 (≠ V75), C791 (= C98), M792 (≠ N99), H793 (= H100), C794 (= C101), P798 (= P105), C799 (= C106), N816 (≠ V123), C833 (= C140), C872 (= C157), Y874 (≠ F159), C875 (= C160), A901 (= A171), C902 (= C172), C906 (= C176)

3egwB The crystal structure of the narghi mutant narh - c16a
46% identity, 38% coverage: 91:186/251 of query aligns to 176:273/509 of 3egwB

query
sites
3egwB

F

F

L

M

M

M

-

Y

L

L

P
|
P

R

R

L

L

C
|
C

N
x
E

H
|
H

C
|
C

E

L

N

N

P
|
P

P

A

C
|
C

I

V

P

A

I

T

C
|
C

P

P

T
x
S

G

G

A

A

T
x
I

F

Y

Q

K

R

R

P

E

-

E

D

D

G

G

I

I

V

V

V

L

V

I

N

D

N

Q

E

D

W

K

C
|
C

V
x
R

G
|
G

C
x
W

G
x
R

Y

M

C
|
C

V

I

Q

T

A

G

C
|
C

P

P

Y

Y

D

K

A

K

R
x
I

F

Y

I

F

N

N

H

W

E

K

T

S

N

G

T

K

A
x
S

D

E

K
|
K

C
|
C

T

I

F
|
F

C
|
C

A

Y

H

P

R

R

L

I

E

E

A

A

G

G

L

Q

L

P

P
x
T

A

V

C
|
C

V

S

E

E

T

T

C
|
C

V

V

G
|
G

E

R

A

I

R
|
R

V

Y

I

L

G

G

D

V

L

L

binding fe3-s4 cluster: P181 (= P95), C196 (= C110), S198 (≠ T112), I201 (≠ T115), C217 (= C130), R218 (≠ V131), G219 (= G132), W220 (≠ C133), R221 (≠ G134), C223 (= C136), S241 (≠ A154), C263 (= C176), G265 (= G178), R268 (= R181)
binding protoporphyrin ix containing fe: W220 (≠ C133), R221 (≠ G134)
binding iron/sulfur cluster: C184 (= C98), E185 (≠ N99), H186 (= H100), C187 (= C101), P190 (= P104), C192 (= C106), C227 (= C140), I232 (≠ R145), K243 (= K156), C244 (= C157), F246 (= F159), C247 (= C160), T257 (≠ P170), C259 (= C172)

Sites not aligning to the query:

binding fe3-s4 cluster: 17, 18, 19, 20, 22
binding protoporphyrin ix containing fe: 88, 89
binding iron/sulfur cluster: 26, 30, 41, 42

P11349 Respiratory nitrate reductase 1 beta chain; Nitrate reductase A subunit beta; Quinol-nitrate oxidoreductase subunit beta; EC 1.7.5.1 from Escherichia coli (strain K12) (see 2 papers)
46% identity, 38% coverage: 91:186/251 of query aligns to 176:273/512 of P11349

query
sites
P11349

F

F

L

M

M

M

-

Y

L

L

P

P

R

R

L

L

C
|
C

N

E

H

H

C
|
C

E

L

N

N

P

P

P

A

C
|
C

I

V

P

A

I

T

C
|
C

P

P

T

S

G

G

A

A

T

I

F

Y

Q

K

R

R

P

E

-

E

D

D

G

G

I

I

V

V

V

L

V

I

N

D

N

Q

E

D

W

K

C
|
C

V

R

G

G

C

W

G

R

Y

M

C
|
C

V

I

Q

T

A

G

C
|
C

P

P

Y

Y

D

K

A

K

R

I

F

Y

I

F

N

N

H

W

E

K

T

S

N

G

T

K

A

S

D

E

K

K

C
|
C

T

I

F

F

C
|
C

A

Y

H

P

R

R

L

I

E

E

A

A

G

G

L

Q

L

P

P

T

A

V

C
|
C

V

S

E

E

T

T

C
|
C

V

V

G

G

E

R

A

I

R

R

V

Y

I

L

G

G

D

V

L

L

C184 (= C98) binding
C187 (= C101) binding
C192 (= C106) binding
C196 (= C110) binding
C217 (= C130) binding
C223 (= C136) binding
C227 (= C140) binding
C244 (= C157) binding
C247 (= C160) binding
C259 (= C172) binding
C263 (= C176) binding

Sites not aligning to the query:

16 binding
19 binding
22 binding
26 binding

4v4cB Pyrogallol hydroxytransferase small subunit (see paper)
32% identity, 72% coverage: 39:219/251 of query aligns to 2:188/274 of 4v4cB

query
sites
4v4cB

K

E

R

Q

Y

Y

G

Y

M

M

V

V

I

I

D

D

L

V

R

A

R

K

C
|
C

V
x
Q

G
x
D

C
|
C

Q
x
N

A
x
N

C
|
C

T

F

V

M

A

G

C
|
C

T

M

F

D

E

E

N

H

-

E

L

L

P

N

P

E

L

W

G

P

Q

G

F

Y

R

T

T

A

T

S

V

M

Q

Q

Q

R

-

G

-

H

-

R

-

W

Y

M

E

N

V

I

S

E

Q

R

D

E

S

R

A

G

T

T

P

Y

P

P

A

R

-

N

-

D

F
x
I

L
x
N

M

Y

L

R

P

P

R

T

L

P

C
|
C

N
x
M

H
|
H

C
|
C

E

E

N

N

P

A

P

P

C
|
C

I

V

P

A

I

K

C

-

P

G

T

N

G

G

A

A

T

V

F

Y

Q

Q

R

R

P

E

D

D

G

G

I

I

V
|
V

V

L

V

I

N

D

N

P

E

E

W

K

C

A

V

K

G

G

C

K

G

K

Y

E

C

L

V

L

Q

D

A

T

C
|
C

P

P

Y

Y

D

G

A
x
V

R

M

F

Y

I

W

N

N

H

E

E

E

T

E

N

N

T

V

A

A

D

Q

K

K

C
|
C

T

T

F
x
M

C
|
C

A

A

H

H

R

L

L

L

E

D

-

D

-

E

-

S

-

W

A

A

G

P

L

K

L

M

P
|
P

A

R

C
|
C

V

A

E

H

T

N

C
|
C

V

-

G

-

E

G

A
x
S

R

F

V
|
V

I
x
Y

G

E

D

F

L

L

N

K

D

T

P

T

H

P

S

E

H

A

I

M

S

A

Q

K

L

-

K

K

A

V

N

E

Q

E

A

E

D

G

I

L

K

E

V

V

L

I

K

K

P

P

D

E

A

L

N

G

T

T

A

K

P

P

R

R

V

V

F

Y

Y

Y

binding calcium ion: I61 (≠ F91), N62 (≠ L92)
binding iron/sulfur cluster: C13 (= C50), Q14 (≠ V51), D15 (≠ G52), C16 (= C53), N17 (≠ Q54), N18 (≠ A55), C19 (= C56), C23 (= C60), C68 (= C98), M69 (≠ N99), H70 (= H100), C71 (= C101), C76 (= C106), V92 (= V123), C109 (= C140), V113 (≠ A144), C126 (= C157), M128 (≠ F159), C129 (= C160), P143 (= P170), C145 (= C172), C149 (= C176), S151 (≠ A180), V153 (= V182), Y154 (≠ I183)

6lodB Cryo-em structure of the air-oxidized photosynthetic alternative complex iii from roseiflexus castenholzii (see paper)
29% identity, 72% coverage: 40:220/251 of query aligns to 682:917/929 of 6lodB

query
sites
6lodB

R

K

Y

W

G

G

M

M

V

S

I

I

D

D

L

L

R

N

R

V

C
|
C

V
x
N

G
x
S

C
|
C

Q
x
N

A
|
A

C
|
C

T

V

V

V

A

A

C
|
C

T

Q

F

S

E

E

N
|
N

-

N

L

I

P

P

P

V

L

V

G

G

Q

K

-

D

-

E

-

V

-

W

-

L

-

G

-

R

-

E

-

M

F

H

R
x
W

T

I

T

R

V
x
I

Q

D

Q

Q

Y

Y

E

Y

V

V

S

G

Q

-

D

D

S

E

A

H

T

T

P

P

P

N

A

V

F

Y

L

N

M

M

L

V

P

-

R

M

L
|
L

C
|
C

N
x
Q

H
x
Q

C
|
C

E

E

N

H

P

A

P
|
P

C
|
C

I

E

P

I

I
x
V

C
|
C

P
|
P

T

V

G

A

A

A

T

T

F

V

Q

H

R

D

P

A

D

E

G

G

I

L

V
x
N

V

N

V

M

N

V

N

Y

E
x
N

W
x
R

C
|
C

V
|
V

G
|
G

C
x
T

G

K

Y

Y

C
|
C

V

S

Q

N

A

N

C
|
C

P

P

Y
|
Y

D

K

A
x
V

R
|
R

F

R

I

F

N

N

-

F

-

L

-

Q

-

Y

-

Q

-

D

-

V

-

P

-

Y

-

R

-

S

-

P

-

I

-

D

-

A

-

S

-

T

-

E

-

N

-

D

-

S

-

I

-

P

-

V

-

L

-

K

-

M

-

R

-

N

-

P

-

D

-

V

-

T

-

V

H

R

E

A

T

R

N

G

T

V

A
x
M

D

E

K
|
K

C
|
C

T

T

F
|
F

C
|
C

A

V

H

Q

R

R

L

I

-

N

-

E

-

A

-
x
R

-
x
I

-

Q

-

A

-
x
R

-

T

-

E

-

N

-

R

-

I

-

A

E

D

A

G

G

E

L

I

L

M

P
x
T

A

A

C
|
C

V

Q

E

Q

T

V

C
|
C

V

P

G

T

E

Q

A

A

R
x
I

V

V

I

F

G

G

D

D

L

L

N

N

D

D

P

P

H

Q

S

A

H

R

I

V

S

V

Q

D

L

L

L

-

K

-

A

-

N

K

Q

E

A

Q

D

P

I

L

K

K

V

Y

L

T

K

S

P

L

D

D

A

K

-

L

N

N

T

T

A

K

P

P

R

R

V

V

F

S

Y

Y

I

L

binding fe3-s4 cluster: V758 (≠ I109), C759 (= C110), P760 (= P111), C779 (= C130), V780 (= V131), G781 (= G132), T782 (≠ C133), C785 (= C136), M838 (≠ A154)
binding heme c: N777 (≠ E128), R778 (≠ W129), R852 (vs. gap), I853 (vs. gap), R856 (vs. gap)
binding iron/sulfur cluster: C692 (= C50), N693 (≠ V51), S694 (≠ G52), C695 (= C53), N696 (≠ Q54), A697 (= A55), C698 (= C56), C702 (= C60), N706 (= N64), W724 (≠ R72), I727 (≠ V75), L746 (= L97), C747 (= C98), Q748 (≠ N99), Q749 (≠ H100), C750 (= C101), P754 (= P105), C755 (= C106), N772 (≠ V123), C789 (= C140), Y791 (= Y142), V793 (≠ A144), R794 (= R145), K840 (= K156), C841 (= C157), F843 (= F159), C844 (= C160), T869 (≠ P170), C871 (= C172), C875 (= C176), I880 (≠ R181)

7b04A of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis.
34% identity, 52% coverage: 91:220/251 of query aligns to 167:305/409 of 7b04A

query
sites
7b04A

F

F

L

F

M

Y

L

L

P
x
Q

R

R

L
x
I

C
|
C

N
|
N

H
|
H

C
|
C

E

T

N

Y

P
|
P

P

G

C
|
C

I

L

P

A

I

A

C
|
C

P

P

T
x
R

G

K

A

A

T
x
I

F

Y

Q

K

R

R

P

K

-

E

D

D

G

G

I

I

V

V

V

L

V

I

N

D

N

Q

E

K

W

R

C
|
C

V
x
R

G
|
G

C
x
Y

G
x
R

Y
x
K

C
|
C

V

V

Q

E

A

Q

C
|
C

P

P

Y

Y

D

K

A

K

R
x
P

F

M

I

Y

N

R

H

G

E

L

T

T

N

R

T

V

A
x
S

D

E

K
|
K

C
|
C

T

I

F
x
A

C
|
C

A

Y

H

P

R

R

L

I

E

E

A

G

G

R

-

D

-

S

-

L

-

T

-

D

-

G

-

R

-

P

L

M

L

E

P
x
T

A
x
R

C
|
C

V

M

E

S

T

A

C
|
C

V
|
V

G

G

E

Q

A
x
I

R
|
R

V

L

I

Q

G

G

D

F

L

L

N

D

D

D

-

N

P

P

H

K

S

N

H

P

I

I

S

T

Q

W

L

L

L

I

K

R

A

H

N

Q

Q

K

A

I

D

A

I

L

K

P

V

-

L

L

K

Y

P

P

D

Q

A

F

N

G

T

T

A

E

P

P

R

N

V

I

F

Y

Y

Y

I

I

binding fe3-s4 cluster: C186 (= C110), I191 (≠ T115), C207 (= C130), R208 (≠ V131), G209 (= G132), Y210 (≠ C133), R211 (≠ G134), K212 (≠ Y135), C213 (= C136), S231 (≠ A154)
binding protoporphyrin ix containing fe: R188 (≠ T112), R208 (≠ V131), Y210 (≠ C133)
binding iron/sulfur cluster: Q171 (≠ P95), I173 (≠ L97), C174 (= C98), N175 (= N99), H176 (= H100), C177 (= C101), P180 (= P104), C182 (= C106), C217 (= C140), P222 (≠ R145), K233 (= K156), C234 (= C157), A236 (≠ F159), C237 (= C160), T255 (≠ P170), R256 (≠ A171), C257 (= C172), C261 (= C176), V262 (= V177), I265 (≠ A180), R266 (= R181)

Sites not aligning to the query:

binding iron/sulfur cluster: 34, 35, 36, 37, 38, 40, 44, 48, 59, 60, 62

Q8GC87 Formate dehydrogenase subunit beta; FDH subunit beta; Formate dehydrogenase small subunit from Megalodesulfovibrio gigas (strain ATCC 19364 / DSM 1382 / NCIMB 9332 / VKM B-1759) (Desulfovibrio gigas) (see paper)
29% identity, 67% coverage: 42:210/251 of query aligns to 4:194/215 of Q8GC87

query
sites
Q8GC87

G

G

M

F

V

F

I

V

D

D

L

T

R

T

R

R

C
|
C

V

T

G

A

C
|
C

Q

R

A

G

C
|
C

T

Q

V

V

A

A

C
|
C

T

K

-

Q

-

W

-

H

-

G

-

N

-

P

-

A

-

T

-

P

-

T

-

E

-

N

-

T

-

G

F

F

E

H

N

Q

L

N

P

P

L

D

G

F

Q

N

F

F

R

H

T

T

T

-

V

Y

Q

K

Q

L

Y

V

E

R

V

M

S

H

Q

E

Q

Q

D

E

S

I

A

D

T

G

P

R

P

I

A

D

F

W

L

L

M

F

L

F

P

P

R

D

L

Q

C
|
C

N

R

H

H

C
|
C

E

I

N

A

P

P

C
|
C

I

-

P

-

I

-

C

-

P

-

T

-

G

K

A

A

T

T

F

A

Q

D

R

M

P

E

D

D

G

E

I

S

V

A

V

I

N

H

N

D

E

D

W

-

C

A

V

T

G

G

C

C

-

V

-

L

-

F

-

T

-

P

-

K

-

T

-

K

-

D

-

L

-

E

-

D

-

Y

G

E

Y

S

C

V

V

I

Q

S

A

A

C
|
C

P

P

Y

Y

D

D

A

V

R

P

F

R

I

K

N

V

H

A

E

E

T

S

N

N

T

Q

A

M

D

A

K

K

C
|
C

T

D

F

M

C
|
C

A

I

H

D

R

R

L

I

E

T

A

N

G

G

L

L

L

R

P

P

A

A

C
|
C

V

V

E

T

T

S

C
|
C

V

P

G

T

E

G

A

A

R

M

V

N

I

F

G

G

D

D

L

L

N

S

D

E

P

M

H

E

S

A

H

M

I

A

S

S

Q

A

L

R

L

L

-

A

-

E

-

I

K

K

A

A

N

A

Q

Y

A

S

D

D

I

A

K

K

V

L

L

C

K

D

P

P

D

D

C12 (= C50) binding
C15 (= C53) binding
C18 (= C56) binding
C22 (= C60) binding
C73 (= C98) binding
C76 (= C101) binding
C81 (= C106) binding
C121 (= C140) binding
C138 (= C157) binding
C141 (= C160) binding
C153 (= C172) binding
C157 (= C176) binding

1h0hB Tungsten containing formate dehydrogenase from desulfovibrio gigas (see paper)
29% identity, 67% coverage: 42:210/251 of query aligns to 3:193/214 of 1h0hB

query
sites
1h0hB

G

G

M
x
F

V

F

I

V

D

D

L

T

R

T

R

R

C
|
C

V
x
T

G
x
A

C
|
C

Q
x
R

A

G

C
|
C

T

Q

V

V

A

A

C
|
C

T

K

-

Q

-

W

-
x
H

-

G

-

N

-

P

-

A

-

T

-

P

-

T

-

E

-

N

-

T

-

G

F

F

E

H

N

Q

L

N

P

P

L

D

G

F

Q

N

F

F

R

H

T

T

T

-

V

Y

Q
x
K

Q

L

Y

V

E

R

V

M

S

H

Q

E

Q

Q

D

E

S

I

A

D

T

G

P

R

P

I

A

D

F

W

L

L

M

F

L

F

P

P

R

D

L
x
Q

C
|
C

N
x
R

H

H

C
|
C

E

I

N

A

P

P

P
|
P

C
|
C

I

-

P

-

I

-

C

-

P

-

T

-

G

K

A

A

T

T

F

A

Q

D

R

M

P

E

D

D

G

E

I

S

V

A

V

I

N

H

N

D

E

D

W

-

C

A

V

T

G

G

C

C

-
x
V

-

L

-

F

-

T

-

P

-

K

-

T

-

K

-

D

-

L

-

E

-

D

-

Y

G

E

Y

S

C

V

V

I

Q

S

A

A

C
|
C

P

P

Y

Y

D

D

A

V

R
x
P

F

R

I

K

N

V

H

A

E

E

T

S

N

N

T

Q

A

M

D

A

K
|
K

C
|
C

T
x
D

F
x
M

C
|
C

A

I

H

D

R

R

L

I

E

T

A

N

G

G

L

L

L

R

P

P

A

A

C
|
C

V

V

E

T

T

S

C
|
C

V
x
P

G

T

E

G

A
|
A

R

M

V

N

I

F

G

G

D

D

L

L

N

S

D

E

P

M

H

E

S

A

H

M

I

A

S

S

Q

A

L

R

L

L

-

A

-

E

-

I

K

K

A

A

N

A

Q

Y

A

S

D

D

I

A

K

K

V

L

L

C

K

D

P

P

D

D

binding iron/sulfur cluster: F4 (≠ M43), C11 (= C50), T12 (≠ V51), A13 (≠ G52), C14 (= C53), R15 (≠ Q54), C17 (= C56), C21 (= C60), H25 (vs. gap), K50 (≠ Q76), Q71 (≠ L97), C72 (= C98), R73 (≠ N99), C75 (= C101), P79 (= P105), C80 (= C106), V101 (vs. gap), C120 (= C140), P125 (≠ R145), K136 (= K156), C137 (= C157), D138 (≠ T158), M139 (≠ F159), C140 (= C160), C152 (= C172), C156 (= C176), P157 (≠ V177), A160 (= A180)

6btmB Structure of alternative complex iii from flavobacterium johnsoniae (wild type) (see paper)
24% identity, 73% coverage: 36:219/251 of query aligns to 679:942/948 of 6btmB

query
sites
6btmB

T

T

S

G

K

H

R

H

Y

F

G

N

M

L

V

S

I

I

D

D

L

L

R

N

R

A

C

C

V

T

G

G

C

C

Q

G

A

A

C

C

T

V

V

I

A

A

C

C

T

H

F

A

E

E

N

N

-

N

L

V

P

P

P

V

L

V

G

G

Q

K

F

A

R

E

T

V

T

R

-

R

-

S

-

R

-

D

-

M

-

H

-

W

-

L

-

R

V

I

Q

D

Q

R

Y

Y

E

Y

V

S

S

S

Q

E

-

S

-

T

-

F

-

E

-

G

-

D

-

N

-

E

-

R

-

K

-

E

-

G

-

I

-

A

-

G

-

L

-

S

-

L

-

S

-

T

-

F

-

N

-

E

-

M

Q

E

D

K

S

P

A

G

T

D

P

N

P

P

A

Q

F

V

L

A

M

F

L

Q

P

P

R

V

L

M

C
|
C

N
x
Q

H

H

C
|
C

E

N

N

H

P

A

P

P

C
|
C

I

E

P

T

I

V

C
|
C

P

P

T

V

G

A

A

A

T

T

F

S

Q

H

R

G

P

R

D

Q

G

G

I

Q

V
x
N

V

H

V

M

N

A

N

Y

E

N

W

R

C
|
C

V
|
V

G

G

C
x
T

G

R

Y

Y

C
|
C

V

A

Q

N

A

N

C
|
C

P

P

Y

Y

D

K

A

V

R
|
R

F

R

I

F

N

N

-

W

-

F

-

L

H

Y

E

N

T

K

N

N

T

S

A

E

-

F

-

D

-

Y

-

H

-

M

-

N

-

D

-

L

-

G

-

R

-

M

-

V

-

L

-

N

-

P

-

D

-

V

-

N

-

V

-

R

-

S

-

R

-

G

-

V

-
x
M

D

E

K

K

C

C

T

S

F

F

C

C

A

I

H

Q

R

S

L

T

E

Q

A

A

G

V

L

I

L

L

P

E

A

A

C

K

V

R

E

Q

-

G

T

R

C

V

V

V

G

G

E

K

-

D

-

E

-

F

-

N

-

A

-

C

-

A

-

C

-

S

-

A

-

C

-

S

-

G

A

A

R

M

V

V

I

F

G

G

D

D

L

V

N

N

D

D

P

K

H

E

S

S

H

E

I

V

S

A

Q

K

L

L

L

A

K

E

A

S

N

E

Q

R

A

-

D

-

I

M

K

Y

V

H

L

L

K

L

P

E

D

H

A

V

N

G

T

T

A

K

P

P

R

N

V

V

F

F

Y

Y

binding fe3-s4 cluster: C789 (= C110), C809 (= C130), V810 (= V131), T812 (≠ C133), C815 (= C136), M862 (vs. gap)
binding iron/sulfur cluster: C777 (= C98), Q778 (≠ N99), C780 (= C101), C785 (= C106), N802 (≠ V123), C819 (= C140), R824 (= R145)

Sites not aligning to the query:

binding (2R)-3-{[(2R)-2-(decanoylamino)-3-hydroxypropyl]sulfanyl}propane-1,2-diyl ditetradecanoate: 1, 2

8cm6D W-formate dehydrogenase c872a from desulfovibrio vulgaris - with formamide (see paper)
29% identity, 67% coverage: 43:211/251 of query aligns to 4:187/214 of 8cm6D

query
sites
8cm6D

M
x
F

V

F

I

V

D

D

L

L

R

S

R

R

C
|
C

V
x
T

G
x
A

C
|
C

Q
x
R

A

G

C
|
C

T

Q

V

I

A

A

C
|
C

T

K

-

Q

F

W

E
x
K

N

N

L

L

P

P

-

A

-

E

-

T

-

R

-

N

-

T

-

G

-

S

-

H

-

Q

-

N

P

P

L

P

G

D

Q

L

F

S

R

Y

T

V

T

T

V

L

Q
x
K

Q

T

Y

V

E

R

V

F

S

T

Q

E

Q

K

D

S

S
x
R

A

K

T

G

P
|
P

P

G

A

I

-

D

F

W

L

L

M

F

L

F

P

P

R

E

L

Q

C
|
C

N
x
R

H

H

C
|
C

E

V

N

E

P
|
P

C
|
C

-

K

-

G

-

Q

I

A

P

D

I

V

C

D

P

L

T

E

G

G

A

A

T

V

F

V

Q

K

R

D

P

E

D

T

G

T

I

G

V

A

V
|
V

V

L

N

F

N

T

E

E

W

L

C

T

V

A

G

K

C

V

-

D

G

G

Y

E

C

S

V

V

Q

R

-

S

A

A

C
|
C

P

P

Y

Y

D

D

A
x
I

R
x
P

F

R

I

I

N

D

H

P

E

V

T

T

N

K

T

R

A

L

D

S

K
|
K

C
|
C

T
x
D

F
x
M

C
|
C

A

N

H

D

R

R

L

V

E

Q

A

N

G

G

L

L

P

P

A

A

C
|
C

V

V

E

K

T

T

C
|
C

V
x
P

G
x
T

E

G

A
x
T

R
x
M

V

N

I

F

G

G

D

D

L

-

N

-

D

-

P

-

H

E

S

Q

H

E

I

M

S

L

Q

A

L

L

L

A

K

E

A

K

N

R

Q

L

A

A

D

E

I

V

K

K

V

K

L

T

K

Y

P

P

D

G

A

A

binding formamide: R59 (≠ S85), P62 (= P88)
binding iron/sulfur cluster: F4 (≠ M43), C11 (= C50), T12 (≠ V51), A13 (≠ G52), C14 (= C53), R15 (≠ Q54), C17 (= C56), C21 (= C60), K25 (≠ E63), K50 (≠ Q76), C73 (= C98), R74 (≠ N99), C76 (= C101), P79 (= P104), P80 (= P105), C81 (= C106), V102 (= V124), C120 (= C140), I124 (≠ A144), P125 (≠ R145), K136 (= K156), C137 (= C157), D138 (≠ T158), M139 (≠ F159), C140 (= C160), C152 (= C172), C156 (= C176), P157 (≠ V177), T158 (≠ G178), T160 (≠ A180), M161 (≠ R181)

8bqgB W-formate dehydrogenase from desulfovibrio vulgaris - soaking with formate 1 min (see paper)
29% identity, 67% coverage: 43:211/251 of query aligns to 4:187/214 of 8bqgB

query
sites
8bqgB

M
x
F

V

F

I

V

D

D

L

L

R

S

R

R

C
|
C

V
x
T

G
x
A

C
|
C

Q
x
R

A

G

C
|
C

T

Q

V

I

A

A

C
|
C

T

K

-

Q

F

W

E
x
K

N

N

L

L

P

P

-

A

-

E

-

T

-

R

-

N

-

T

-

G

-

S

-

H

-

Q

-

N

P

P

L

P

G

D

Q

L

F

S

R

Y

T

V

T

T

V

L

Q
x
K

Q

T

Y

V

E

R

V

F

S

T

Q

E

Q

K

D

S

S

R

A

K

T

G

P

P

P

G

A

I

-

D

F

W

L

L

M

F

L

F

P

P

R

E

L

Q

C
|
C

N
x
R

H

H

C
|
C

E

V

N

E

P

P

P
|
P

C
|
C

-

K

-

G

-

Q

I

A

P

D

I

V

C

D

P

L

T

E

G

G

A

A

T

V

F

V

Q

K

R

D

P

E

D

T

G

T

I

G

V

A

V
|
V

V

L

N

F

N

T

E

E

W

L

C

T

V

A

G

K

C

V

-

D

G

G

Y

E

C

S

V

V

Q

R

-

S

A

A

C
|
C

P

P

Y

Y

D

D

A
x
I

R
x
P

F

R

I

I

N

D

H

P

E

V

T

T

N

K

T

R

A

L

D

S

K
|
K

C
|
C

T

D

F
x
M

C
|
C

A

N

H

D

R

R

L

V

E

Q

A

N

G

G

L

L

P

P

A

A

C
|
C

V

V

E

K

T

T

C
|
C

V
x
P

G
x
T

E

G

A
x
T

R
x
M

V

N

I

F

G

G

D

D

L

-

N

-

D

-

P

-

H

E

S

Q

H

E

I

M

S

L

Q

A

L

L

L

A

K

E

A

K

N

R

Q

L

A

A

D

E

I

V

K

K

V

K

L

T

K

Y

P

P

D

G

A

A

binding iron/sulfur cluster: F4 (≠ M43), C11 (= C50), T12 (≠ V51), A13 (≠ G52), C14 (= C53), R15 (≠ Q54), C17 (= C56), C21 (= C60), K25 (≠ E63), K50 (≠ Q76), C73 (= C98), R74 (≠ N99), C76 (= C101), P80 (= P105), C81 (= C106), V102 (= V124), C120 (= C140), I124 (≠ A144), P125 (≠ R145), K136 (= K156), C137 (= C157), M139 (≠ F159), C140 (= C160), C152 (= C172), C156 (= C176), P157 (≠ V177), T158 (≠ G178), T160 (≠ A180), M161 (≠ R181)

Query Sequence

>7023405 FitnessBrowser__ANA3:7023405
MDKSKRQFLGKMASVSVGAALIPVVQVQAQPAQTATTSKRYGMVIDLRRCVGCQACTVAC
TFENLPPLGQFRTTVQQYEVSQQDSATPPAFLMLPRLCNHCENPPCIPICPTGATFQRPD
GIVVVNNEWCVGCGYCVQACPYDARFINHETNTADKCTFCAHRLEAGLLPACVETCVGEA
RVIGDLNDPHSHISQLLKANQADIKVLKPDANTAPRVFYIGMNSAFEDRINGQAPVRTLL
TDSGEEIHHGH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory