SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 7023614 Shewana3_0843 hypothetical protein (RefSeq) to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

3iehA Crystal structure of putative metallopeptidase (yp_001051774.1) from shewanella baltica os155 at 2.45 a resolution
95% identity, 97% coverage: 4:271/275 of query aligns to 1:268/268 of 3iehA

query
sites
3iehA
R
 
R
S
 
S
P
 
P
F
 
F
E
 
E
S
 
S
F
 
F
Q
 
Q
W
 
W
K
 
K
S
 
S
D
 
D
I
 
I
F
 
F
N
 
N
C
 
C
E
 
E
S
 
S
T
 
T
D
 
D
I
 
I
D
 
D
N
 
N
F
 
F
Y
 
Y
L
 
L
Q
 
L
L
 
L
E
 
E
Q
 
Q
E
 
E
M
 
M
S
 
T
R
 
R
L
 
L
G
 
G
M
 
M
V
 
V
E
 
E
K
 
K
K
 
N
L
 
L
G
 
G
E
 
E
V
 
V
G
 
G
K
 
K
Y
 
Y
S
 
K
V
 
V
S
 
S
L
 
L
Y
 
Y
Q
 
Q
S
 
S
P
 
P
A
 
A
A
 
A
K
 
K
S
 
S
G
 
G
L
 
L
P
 
P
S
 
S
L
 
L
L
 
L
I
 
I
S
 
S
A
 
A
G
 
G
F
 
F
H
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H
G
 
G
E
 
E
E
|
E
S
 
S
A
 
A
G
 
G
P
 
P
W
 
W
G
 
G
L
 
L
L
 
L
H
 
H
F
 
F
L
 
L
S
 
S
E
 
E
A
 
A
S
 
S
A
 
A
D
 
D
L
 
L
F
 
F
E
 
E
R
 
R
V
 
V
N
 
N
L
 
L
S
 
S
I
 
L
L
 
L
P
 
P
L
 
L
V
 
V
N
 
N
P
 
P
T
 
T
G
 
G
F
 
F
K
 
S
R
 
R
G
 
G
H
 
H
R
 
R
F
 
F
N
 
N
K
 
K
F
 
Y
G
 
G
E
 
E
N
 
N
P
 
P
N
 
N
R
 
R
G
 
G
F
 
F
V
 
V
F
 
F
E
 
E
N
 
N
G
 
G
K
 
K
P
 
P
K
 
K
A
 
A
N
 
N
E
 
E
S
 
H
T
 
T
S
 
S
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V
E
 
E
G
 
G
K
 
K
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L
L
 
L
L
 
L
D
 
D
H
 
H
A
 
A
Q
 
Q
L
 
L
L
 
L
I
 
I
A
 
A
A
 
A
S
 
C
R
 
R
D
 
D
G
 
G
I
 
I
L
 
L
T
 
T
C
 
C
H
|
H
E
 
E
D
 
D
V
 
V
L
 
L
S
 
S
R
 
R
D
 
E
A
 
A
Y
 
Y
V
 
V
Y
 
Y
S
 
S
F
 
F
E
 
E
P
 
P
S
 
S
Q
 
Q
V
 
V
P
 
P
G
 
G
R
 
R
F
 
F
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S
I
 
L
D
 
D
L
 
L
R
 
R
D
 
D
T
 
T
L
 
L
G
 
G
G
 
G
Y
 
Y
F
 
F
P
 
P
I
 
I
A
 
A
E
 
V
D
 
D
G
 
G
E
 
E
I
 
I
D
 
D
G
 
A
C
 
C
P
 
P
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V
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K
D
 
D
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G
L
 
L
I
 
I
F
 
F
N
 
N
H
 
H
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F
D
 
D
T
 
T
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S
F
 
F
E
 
E
A
 
A
C
 
C
L
 
L
V
 
V
R
 
R
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S
G
 
G
A
 
A
R
 
R
V
 
V
G
 
G
A
 
A
C
 
C
T
 
T
E
 
E
T
 
T
P
 
P
A
 
A
L
 
L
Q
 
Q
N
 
N
F
 
F
D
 
D
Q
 
Q
R
 
R
V
 
V
L
 
L
A
 
A
N
 
N
S
 
S
A
 
A
A
 
A
M
 
M
T
 
T
H
 
H
F
 
F
L
 
L
A
 
A
L
 
L
C
 
C
A
 
A

4okoA Crystal structure of francisella tularensis rep34 (rapid encystment phenotype protein 34 kda) (see paper)
30% identity, 32% coverage: 48:135/275 of query aligns to 56:143/290 of 4okoA

query
sites
4okoA
V
 
V
G
 
G
K
 
S
Y
 
Y
S
 
K
V
 
L
S
 
Y
L
 
A
Y
 
L
Q
 
K
S
 
T
P
 
K
A
 
N
A
 
W
K
 
D
S
 
A
G
 
S
L
 
K
P
 
P
S
 
Y
L
 
V
L
 
L
I
 
V
S
 
T
A
 
G
G
 
G
F
 
V
H
|
H
G
 
G
E
 
Y
E
|
E
S
 
T
A
 
S
G
 
G
P
 
V
W
 
Q
G
 
G
L
 
A
L
 
I
H
 
S
F
 
F
L
 
A
S
 
Q
E
 
T
A
 
R
S
 
A
A
 
L
D
 
E
L
 
F
F
 
A
E
 
R
R
 
D
V
 
Y
N
 
N
L
 
I
S
 
V
I
 
I
L
 
L
P
 
P
L
 
C
V
 
L
N
 
S
P
 
P
T
 
W
G
 
G
F
 
Y
K
 
E
R
 
T
G
 
I
H
 
N
R
 
R
F
 
W
N
 
N
K
 
P
F
 
N
G
 
A
E
 
L
N
 
D
P
 
P
N
 
N
R
 
R
G
 
S
F
 
F
V
 
Y
F
 
L
E
 
E
N
 
S
G
 
G

Sites not aligning to the query:

Query Sequence

>7023614 Shewana3_0843 hypothetical protein (RefSeq)
MVSRSPFESFQWKSDIFNCESTDIDNFYLQLEQEMSRLGMVEKKLGEVGKYSVSLYQSPA
AKSGLPSLLISAGFHGEESAGPWGLLHFLSEASADLFERVNLSILPLVNPTGFKRGHRFN
KFGENPNRGFVFENGKPKANESTSVEGKLLLDHAQLLIAASRDGILTCHEDVLSRDAYVY
SFEPSQVPGRFSIDLRDTLGGYFPIAEDGEIDGCPVKDGLIFNHFDTSFEACLVRSGARV
GACTETPALQNFDQRVLANSAAMTHFLALCAPLCD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory