Comparing 7023652 Shewana3_0881 polar amino acid ABC transporter, inner membrane subunit (RefSeq) to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
50% identity, 89% coverage: 23:223/226 of query aligns to 14:215/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
51% identity, 88% coverage: 23:222/226 of query aligns to 14:214/214 of 4ymwC
>7023652 Shewana3_0881 polar amino acid ABC transporter, inner membrane subunit (RefSeq)
MLEAINTSLFSPIGDDGMIGILLILNGLKVTLIVTFFAMLLGAVLGVGTTLMKMSSKWYI
RFPAELYVGVIRGTPVVVQLVILYFIVLAAFDVDKVTAAIIAFGLNSGAYISEIIRAGIQ
AVDKGQTEAARSLGLSQAMTMKLIILPQAIKNILPALGNEFIVLLKETAVIGFIGGVDLM
RAGEIIRSRTFEDSIPLFTCALIYLFLTYSFTFMLSKFEKRLKQSD
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory