SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 7023682 FitnessBrowser__ANA3:7023682 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

Q02DS7 Tryptophan-specific transport protein; Tryptophan permease from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
32% identity, 94% coverage: 1:369/391 of query aligns to 15:388/417 of Q02DS7

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Q02DS7
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Sites not aligning to the query:

Query Sequence

>7023682 FitnessBrowser__ANA3:7023682
MLGSIAIVAGTAIGAGMLALPLATAALGMVPAILLMVVIWGLSAYTSLLMLEINLRSGVG
DNVHAITGKLLGKKGQMVQGASFLSLLFALTAAYLTGGSSLLVLKAKNMFDLVLDNQLAV
VLFTLVLGGFAALGVAWVDKASRFLFSLMILLLIVVVLFLLPEVSISSMATSAVAESMTS
SWMAAIPVVFTSFGFHVCIATLVRYLDGDAVSLRKVLLIGSTIPLACYIFWLLVTLGTVG
GTEISSFNGSLPALISALQEIAHTPWISKCISLFADLALITSFLGVTLSLYDFVAELTRA
KKTFLGRAQTWLLTFVPPLLCALYVPEGFVAVLGFAAVPLVVMIIFLPIVMALRQRQATP
QGYQVSGGTFSLGIAGLLGAVIIGAQLFVAL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory