SitesBLAST
Comparing 7025753 Shewana3_2903 inorganic polyphosphate/ATP-NAD kinase (RefSeq) to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P0A7B3 NAD kinase; ATP-dependent NAD kinase; EC 2.7.1.23 from Escherichia coli (strain K12) (see paper)
57% identity, 94% coverage: 18:309/309 of query aligns to 1:292/292 of P0A7B3
- R175 (= R191) mutation to E: Does not exhibit NADH kinase activity in addition to NAD kinase activity.; mutation to G: Exhibits NADH kinase activity in addition to NAD kinase activity. Reduces the Vmax of the NAD kinase activity.; mutation to H: Exhibits NADH kinase activity in addition to NAD kinase activity.; mutation to I: Does not exhibit NADH kinase activity in addition to NAD kinase activity.; mutation to K: Does not exhibit NADH kinase activity in addition to NAD kinase activity.; mutation to Q: Exhibits NADH kinase activity in addition to NAD kinase activity.; mutation to T: Exhibits NADH kinase activity in addition to NAD kinase activity.
7mh7A Crystal structure of NAD kinase from pseudomonas aeruginosa pao1
51% identity, 93% coverage: 22:308/309 of query aligns to 3:290/290 of 7mh7A
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G70 (= G88), D71 (= D89), G72 (= G90), L75 (= L93), R93 (= R111), F98 (= F116), N145 (= N163), D146 (≠ E164), T183 (= T201), T186 (= T204), A187 (= A205), Y188 (= Y206), S191 (= S209), D244 (= D262), G245 (= G263), Q246 (≠ H264), K283 (= K301)
P9WHV7 NAD kinase; ATP-dependent NAD kinase; Poly(P)-dependent NAD kinase; PPNK; EC 2.7.1.23 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 3 papers)
33% identity, 79% coverage: 64:307/309 of query aligns to 59:307/307 of P9WHV7
- D85 (= D89) mutation to A: Abolishes catalytic activity.
- N159 (= N163) mutation to A: Abolishes catalytic activity.
- NE 159:160 (= NE 163:164) binding
- E160 (= E164) mutation to A: Abolishes catalytic activity.
- G190 (= G194) mutation to A: Abolishes catalytic activity.
- L192 (≠ I196) mutation to A: Abolishes catalytic activity.
- T195 (= T199) mutation to A: It promotes stronger allosteric interactions.
- P196 (= P200) mutation to A: Abolishes catalytic activity.
- T197 (= T201) binding ; mutation to A: Abolishes catalytic activity.
- G198 (= G202) mutation to A: Abolishes catalytic activity.
- S199 (= S203) mutation to A: Lower catalytic efficiency. A perturbation of the allosteric interactions is observed when NAD is used as substrate.
- T200 (= T204) mutation to A: Abolishes catalytic activity.
- TAYAFS 200:205 (≠ TAYALS 204:209) binding
- Y202 (= Y206) mutation to A: Abolishes catalytic activity.
- G207 (= G211) mutation to A: Abolishes catalytic activity.
- G208 (= G212) mutation to A: Possesses 30% of the activity compared to the wild-type enzyme. While mutant affects the catalytic efficiency, it does not alter the binding affinity for ATP and poly(P). It causes a decrease in the affinity for NAD and alters the allosteric interactions mediated by the dinucleotide, both in the presence of poly(P) and ATP.
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
O13863 Uncharacterized kinase C1B1.02c; EC 2.7.1.- from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
28% identity, 75% coverage: 75:307/309 of query aligns to 270:514/537 of O13863
Sites not aligning to the query:
- 72 modified: Phosphoserine
3afoA Crystal structure of yeast nadh kinase complexed with nadh
29% identity, 74% coverage: 75:304/309 of query aligns to 106:342/360 of 3afoA
- binding 1,4-dihydronicotinamide adenine dinucleotide: D120 (= D89), G121 (= G90), L124 (= L93), F148 (= F116), L149 (= L117), N196 (= N163), D197 (≠ E164), F199 (≠ V166), T234 (= T201), T237 (= T204), A238 (= A205), Y239 (= Y206), S242 (= S209), D300 (= D262), G301 (= G263)
1y3iA Crystal structure of mycobacterium tuberculosis NAD kinase-NAD complex (see paper)
35% identity, 64% coverage: 87:285/309 of query aligns to 12:209/231 of 1y3iA
- binding nicotinamide-adenine-dinucleotide: D14 (= D89), G15 (= G90), L18 (= L93), R38 (≠ N113), F41 (= F116), L42 (= L117), N88 (= N163), E89 (= E164), T126 (= T201), T129 (= T204), A130 (= A205), Y131 (= Y206), S134 (= S209), D186 (= D262)
Q9P7K3 Uncharacterized kinase C24B10.02c; EC 2.7.1.- from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
25% identity, 73% coverage: 81:305/309 of query aligns to 176:407/449 of Q9P7K3
Sites not aligning to the query:
- 420 modified: Phosphoserine
1z0zA Crystal structure of a NAD kinase from archaeoglobus fulgidus in complex with NAD (see paper)
32% identity, 60% coverage: 81:264/309 of query aligns to 41:211/249 of 1z0zA
- active site: E96 (= E148), C105 (≠ A157)
- binding nicotinamide-adenine-dinucleotide: D49 (= D89), L53 (= L93), L75 (≠ F116), N115 (= N163), E116 (= E164), A125 (= A173), K126 (≠ H174), M127 (= M175), R143 (= R191), D145 (= D193), I153 (≠ T201), T156 (= T204), G157 (≠ A205), Y158 (= Y206), S161 (= S209), A180 (≠ F228), F182 (≠ H230), D209 (= D262), G210 (= G263)
1z0sA Crystal structure of an NAD kinase from archaeoglobus fulgidus in complex with atp (see paper)
32% identity, 60% coverage: 81:264/309 of query aligns to 41:211/249 of 1z0sA
- active site: E96 (= E148), C105 (≠ A157)
- binding adenosine-5'-triphosphate: G50 (= G90), L53 (= L93), R54 (≠ G94), N115 (= N163), E116 (= E164), A125 (= A173), K126 (≠ H174), M127 (= M175), R143 (= R191), D145 (= D193), G157 (≠ A205), Y158 (= Y206), S161 (= S209), A180 (≠ F228), F182 (≠ H230), D209 (= D262), Q211 (≠ H264)
- binding pyrophosphate 2-: G47 (= G87), G48 (= G88), D49 (= D89), G50 (= G90), T51 (≠ N91), R54 (≠ G94), G71 (= G112), R72 (≠ N113)
Sites not aligning to the query:
1suwA Crystal structure of a NAD kinase from archaeoglobus fulgidus in complex with its substrate and product: insights into the catalysis of NAD kinase (see paper)
32% identity, 60% coverage: 81:264/309 of query aligns to 41:211/249 of 1suwA
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G48 (= G88), D49 (= D89), G50 (= G90), L53 (= L93), R54 (≠ G94), L75 (≠ F116), N115 (= N163), E116 (= E164), A125 (= A173), M127 (= M175), R143 (= R191), D145 (= D193), I153 (≠ T201), T156 (= T204), G157 (≠ A205), Y158 (= Y206), S161 (= S209), A180 (≠ F228), F182 (≠ H230), D209 (= D262), G210 (= G263), Q211 (≠ H264)
O30297 NAD kinase; ATP-dependent NAD kinase; EC 2.7.1.23 from Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) (see paper)
32% identity, 60% coverage: 81:264/309 of query aligns to 41:211/249 of O30297
7zzdA Crystal structure of NAD kinase 1 from listeria monocytogenes in complex with a linear di-adenosine derivative (see paper)
28% identity, 62% coverage: 81:273/309 of query aligns to 37:228/262 of 7zzdA
- binding 2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(3-azanylpropanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid: D45 (= D89), G46 (= G90), L49 (= L93), F74 (= F116), Y75 (≠ L117), N120 (= N163), E121 (= E164), S156 (≠ T201), T159 (= T204), A160 (= A205), Y161 (= Y206), S164 (= S209), D220 (= D262), H221 (= H266)
7zz9A Crystal structure of NAD kinase 1 from listeria monocytogenes in complex with a linear di-adenosine derivative (see paper)
28% identity, 62% coverage: 81:273/309 of query aligns to 37:228/262 of 7zz9A
- binding 3-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-azanylethyl)amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-3-oxidanylidene-propanoic acid: D45 (= D89), G46 (= G90), L49 (= L93), F74 (= F116), Y75 (≠ L117), N120 (= N163), E121 (= E164), S156 (≠ T201), T159 (= T204), A160 (= A205), Y161 (= Y206), S164 (= S209), D220 (= D262)
6z64A Crystal structure of NAD kinase 1 from listeria monocytogenes in complex with a di-adenosine derivative (see paper)
28% identity, 62% coverage: 81:273/309 of query aligns to 37:228/262 of 6z64A
- binding (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl-(3-azanylpropyl)amino]methyl]oxolane-3,4-diol: D45 (= D89), G46 (= G90), L49 (= L93), H71 (≠ N113), F74 (= F116), Y75 (≠ L117), N120 (= N163), E121 (= E164), S156 (≠ T201), T159 (= T204), A160 (= A205), Y161 (= Y206), S164 (= S209), D220 (= D262), H221 (= H266)
6rbzA Crystal structure of NAD kinase 1 from listeria monocytogenes in complexe with an adenine derivative (see paper)
28% identity, 62% coverage: 81:273/309 of query aligns to 37:228/262 of 6rbzA
7zzhA Crystal structure of NAD kinase 1 from listeria monocytogenes in complex with a linear di-adenosine derivative (see paper)
29% identity, 62% coverage: 81:273/309 of query aligns to 37:230/264 of 7zzhA
- binding (1~{R},22~{R},23~{S},24~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-23,24-bis(oxidanyl)-25-oxa-2,4,6,9,14,17,20-heptazatetracyclo[20.2.1.0^{2,10}.0^{3,8}]pentacosa-3(8),4,6,9-tetraen-11-yne-16,19-dione: D45 (= D89), G46 (= G90), L49 (= L93), F74 (= F116), Y75 (≠ L117), N122 (= N163), E123 (= E164), S158 (≠ T201), T161 (= T204), A162 (= A205), Y163 (= Y206), S166 (= S209), D222 (= D262)
7zzfA Crystal structure of NAD kinase 1 from listeria monocytogenes in complex with a linear di-adenosine derivative (see paper)
29% identity, 62% coverage: 81:273/309 of query aligns to 37:230/264 of 7zzfA
- binding (1~{R},23~{R},24~{S},25~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-24,25-bis(oxidanyl)-26-oxa-2,4,6,9,14,17,21-heptazatetracyclo[21.2.1.0^{2,10}.0^{3,8}]hexacosa-3(8),4,6,9-tetraen-11-yne-18,20-dione: D45 (= D89), G46 (= G90), L49 (= L93), F74 (= F116), Y75 (≠ L117), N122 (= N163), E123 (= E164), S158 (≠ T201), T161 (= T204), A162 (= A205), Y163 (= Y206), S166 (= S209), D222 (= D262)
7zzbA Crystal structure of NAD kinase 1 from listeria monocytogenes in complex with a linear di-adenosine derivative (see paper)
29% identity, 62% coverage: 81:273/309 of query aligns to 37:230/264 of 7zzbA
- binding 2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethylcarbamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid: D45 (= D89), G46 (= G90), L49 (= L93), F74 (= F116), Y75 (≠ L117), N122 (= N163), E123 (= E164), S158 (≠ T201), T161 (= T204), A162 (= A205), Y163 (= Y206), S166 (= S209), D222 (= D262), H223 (= H266)
7zz7A Crystal structure of NAD kinase 1 from listeria monocytogenes in complex with a linear di-adenosine derivative (see paper)
29% identity, 62% coverage: 81:273/309 of query aligns to 37:230/264 of 7zz7A
- binding 2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid: D45 (= D89), G46 (= G90), L49 (= L93), F74 (= F116), Y75 (≠ L117), N122 (= N163), E123 (= E164), S158 (≠ T201), T161 (= T204), A162 (= A205), Y163 (= Y206), S166 (= S209), D222 (= D262), H223 (= H266)
6rbvA Crystal structure of NAD kinase 1 from listeria monocytogenes in complexe with an adenine derivative (see paper)
29% identity, 62% coverage: 81:273/309 of query aligns to 37:230/264 of 6rbvA