Comparing 7026313 FitnessBrowser__ANA3:7026313 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
61% identity, 100% coverage: 3:656/656 of query aligns to 2:650/650 of 5ws4A
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
55% identity, 100% coverage: 4:656/656 of query aligns to 3:648/648 of P75831
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
52% identity, 99% coverage: 5:654/656 of query aligns to 3:615/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
51% identity, 99% coverage: 5:655/656 of query aligns to 3:592/592 of 5lj7A
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
52% identity, 34% coverage: 3:225/656 of query aligns to 1:223/226 of 5xu1B
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
49% identity, 34% coverage: 5:226/656 of query aligns to 1:227/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
48% identity, 34% coverage: 5:226/656 of query aligns to 1:227/230 of 1l2tA
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
46% identity, 31% coverage: 24:225/656 of query aligns to 18:219/223 of 2pclA
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
42% identity, 34% coverage: 1:225/656 of query aligns to 1:226/233 of P75957
7mdyC Lolcde nucleotide-bound
42% identity, 34% coverage: 5:225/656 of query aligns to 2:223/226 of 7mdyC
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
41% identity, 34% coverage: 2:225/656 of query aligns to 1:225/229 of 7v8iD
7arlD Lolcde in complex with lipoprotein and adp (see paper)
43% identity, 33% coverage: 5:220/656 of query aligns to 2:218/222 of 7arlD
8g4cB Bceabs atpgs high res tm (see paper)
41% identity, 33% coverage: 5:220/656 of query aligns to 3:219/248 of 8g4cB
7tchB Bceab e169q variant atp-bound conformation (see paper)
41% identity, 33% coverage: 5:220/656 of query aligns to 2:218/245 of 7tchB
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
34% identity, 39% coverage: 5:263/656 of query aligns to 1:258/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
34% identity, 39% coverage: 5:263/656 of query aligns to 2:259/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
34% identity, 39% coverage: 5:263/656 of query aligns to 2:259/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
34% identity, 39% coverage: 5:263/656 of query aligns to 2:259/344 of 6cvlD
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
40% identity, 33% coverage: 8:225/656 of query aligns to 4:217/240 of 4ymuJ
P9WQK5 Uncharacterized ABC transporter ATP-binding protein Rv0073 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
40% identity, 34% coverage: 14:235/656 of query aligns to 12:233/330 of P9WQK5
>7026313 FitnessBrowser__ANA3:7026313
MSKPLLEVSACYRSFQAGEQQLTVLKDINLSIARGEMVAIVGASGSGKSTLMNILGCLDK
PSKGSYFIDGQDTSQMDVDELAKLRREHFGFIFQRYHLLGDLNAVGNVEVPAVYAGKDRL
ERRERAESLLSRLGLGERLDHKPNQLSGGQQQRVSVARALMNGGDVILADEPTGALDSHS
GEEMMRLLQELHREGQTIIIVTHDMHVAQHADRIIEIKDGVIISDEPNPASNIAAAPKTE
VIPAKTKARARVAAWDRYAEALKMALLAMSTHRLRTFLTMLGIIIGIASVVSVVALGEGS
QREILKSISSMGTNTIDIRPGSGFGDRRSARVRTLTASDANALKNLPYVDSVTPSIGSSA
TVRYGNKAVTATVNGVGPEFFRVRGYELAQGQFWDDDSVNALAQDAVIDENTRKQLFPNS
SGAMNSAIGEVIFLGDLPVRIIGVTQPKESAFGNSDALNVWVPYTTVSGRMVGKKYLDGI
TVRLDESVPSNAAEQGIISLLKMRHGTQDFFTINTDTIRQNIEKTTATMTLLISAIAVIS
LVVGGIGVMNIMLVSVTERTREIGVRMAVGARQSDILRQFLIEAVLVCLCGGALGVALAY
LIGVVFAQAGGSFQMIYSTTSIVAAFACSTLIGVLFGFLPARNAARLDPVDALARE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory