SitesBLAST
Comparing 7026357 FitnessBrowser__ANA3:7026357 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 10 hits to proteins with known functional sites (download)
Q94B78 Glycine dehydrogenase (decarboxylating) 1, mitochondrial; Glycine cleavage system P protein 1; Glycine decarboxylase 1; Glycine decarboxylase P-protein 1; AtGLDP1; Glycine dehydrogenase (aminomethyl-transferring) 1; EC 1.4.4.2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
55% identity, 98% coverage: 13:957/962 of query aligns to 77:1026/1037 of Q94B78
- C98 (≠ V34) modified: S-glutathionyl cysteine; transient
- C402 (= C335) modified: S-glutathionyl cysteine
- C463 (≠ G395) modified: S-glutathionyl cysteine
- C777 (≠ A712) modified: S-glutathionyl cysteine; transient
- C943 (≠ I873) modified: S-glutathionyl cysteine; transient
- C1022 (= C953) modified: S-glutathionyl cysteine; transient
4lhdA Crystal structure of synechocystis sp. Pcc 6803 glycine decarboxylase (p-protein), holo form with pyridoxal-5'-phosphate and glycine, closed flexible loop (see paper)
55% identity, 99% coverage: 6:955/962 of query aligns to 6:949/952 of 4lhdA
- binding bicarbonate ion: S68 (≠ G64), Y70 (≠ A66), G71 (≠ E67), T137 (≠ Q133), D141 (= D137), D480 (≠ H477), S509 (= S506), G837 (= G842), F838 (= F843), E863 (= E868), R866 (= R871), W923 (≠ A929), S948 (≠ A954)
- binding glycine: Y120 (= Y116), S515 (= S512), H609 (= H606), N633 (= N630), F664 (≠ Y661), E665 (= E662), A666 (≠ E663), K712 (= K709), G802 (= G807), N803 (≠ R808), T842 (= T847), W845 (≠ F850), L903 (≠ I908), I904 (≠ M909), G906 (≠ P911), W908 (≠ F913), Q914 (≠ R920)
- binding phosphate ion: Q62 (≠ S58), L63 (≠ I59), P64 (≠ G60), W559 (= W556), D567 (= D564), K731 (= K728), S732 (≠ A729), H733 (= H730)
Sites not aligning to the query:
6i35A Crystal structure of human glycine decarboxylase (p-protein) bound with pyridoxyl-glycine-5'-monophosphate
54% identity, 99% coverage: 9:958/962 of query aligns to 9:953/953 of 6i35A
- binding bicarbonate ion: R413 (= R413), L414 (≠ F414)
- binding n-glycine-[3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-yl-methane]: Y113 (= Y113), Y116 (= Y116), C334 (= C335), T335 (= T336), S505 (= S512), C506 (= C513), S565 (= S572), G566 (= G573), A567 (= A574), E570 (= E577), H599 (= H606), T601 (= T608), D675 (= D682), A677 (= A684), H697 (= H704), N699 (= N706), H701 (= H708), K702 (= K709)
6i34B Crystal structure of neanderthal glycine decarboxylase (p-protein)
54% identity, 99% coverage: 9:957/962 of query aligns to 7:954/954 of 6i34B
- binding pyridoxal-5'-phosphate: C332 (= C335), T333 (= T336), S507 (= S512), S567 (= S572), G568 (= G573), A569 (= A574), E572 (= E577), H601 (= H606), T603 (= T608), D677 (= D682), A679 (= A684), H699 (= H704), N701 (= N706), H703 (= H708), K704 (= K709)
6i33A Crystal structure of human glycine decarboxylase (p-protein)
54% identity, 99% coverage: 9:958/962 of query aligns to 9:950/950 of 6i33A