SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 71 a.a. (MSSPNTETLT...) to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

O35019 UPF0435 protein YfkK from Bacillus subtilis (strain 168) (see paper)
100% identity, 100% coverage: 1:71/71 of query aligns to 1:71/71 of O35019

query
sites
O35019
M
 
M
S
 
S
S
 
S
P
 
P
N
 
N
T
 
T
E
 
E
T
 
T
L
 
L
T
 
T
Q
 
Q
M
 
M
I
 
I
E
 
E
E
 
E
I
 
I
S
 
S
Q
 
Q
K
 
K
L
 
L
N
 
N
M
 
M
L
 
L
N
 
N
V
 
V
G
 
G
V
 
V
I
 
I
K
 
K
A
 
A
E
 
E
D
 
D
F
 
F
S
 
S
D
 
D
E
 
E
K
 
K
I
 
I
E
 
E
D
 
D
L
 
L
T
 
T
Y
 
Y
L
 
L
H
 
H
R
 
R
M
 
M
V
 
V
M
 
M
K
 
K
K
 
K
E
 
E
S
 
S
F
 
F
S
 
S
P
 
P
S
|
S
E
 
E
M
 
M
Q
 
Q
A
 
A
I
 
I
A
 
A
Q
 
Q
E
 
E
L
 
L
A
 
A
S
 
S
L
 
L
R
 
R
K
 
K

Query Sequence

>71 a.a. (MSSPNTETLT...)
MSSPNTETLTQMIEEISQKLNMLNVGVIKAEDFSDEKIEDLTYLHRMVMKKESFSPSEMQ
AIAQELASLRK

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SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory