SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 7398304_63_256 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
41% identity, 100% coverage: 1:194/194 of query aligns to 46:238/240 of 4qhzC

query
sites
4qhzC
V
 
V
L
 
L
Y
 
F
S
 
D
G
 
G
T
 
K
P
 
-
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I
 
L
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A
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W
E
 
E
H
 
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K
A
 
G
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G
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A
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A
K
 
E
W
 
W
K
 
D
P
 
V
E
 
H
G
 
D
D
 
G
A
 
V
L
 
F
T
 
T
I
 
V
V
 
N
P
 
K
K
 
K
A
 
K
T
 
G
D
 
D
I
 
I
R
 
Q
T
 
T
K
 
K
Q
 
Q
K
 
K
F
 
F
G
 
N
N
 
D
I
 
F
Q
 
Q
L
 
M
H
 
H
L
 
I
E
 
E
W
 
W
R
 
Q
T
 
V
P
 
P
D
 
T
P
 
N
S
 
I
E
 
T
D
 
G
K
 
E
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S
F
 
Q
N
 
S
R
 
R
G
 
G
N
|
N
S
|
S
G
 
G
V
 
I
L
 
F
I
 
L
M
 
Q
G
 
G
L
 
M
Y
 
Y
E
|
E
L
 
V
Q
|
Q
I
 
V
Y
 
L
E
 
D
S
 
C
W
 
-
N
 
-
Y
 
Y
N
 
N
T
 
N
R
 
P
I
 
T
Y
 
Y
Y
 
V
N
 
N
G
 
G
Q
 
Q
A
 
T
G
 
G
S
 
S
V
 
I
Y
 
Y
K
 
K
Q
 
Q
H
 
S
A
 
I
P
 
P
L
 
L
V
 
A
N
 
N
A
 
A
A
 
M
R
 
R
K
 
K
P
 
P
Q
 
G
T
 
E
W
 
W
Q
 
N
T
 
V
Y
 
Y
D
 
D
V
 
I
I
 
I
F
 
Y
E
 
T
A
 
A
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P
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T
F
 
F
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K
A
 
E
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D
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G
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S
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H
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P
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T
M
 
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T
V
 
V
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I
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Q
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N
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G
V
 
V
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V
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L
L
 
Q
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N
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H
V
 
T
E
 
T
L
 
I
K
 
L
G
 
G
P
 
T
M
 
T
V
 
E
Y
 
W
Q
 
I
G
 
G
Y
 
F
P
 
P
K
 
Q
Y
 
V
K
 
K
F
 
K
H
 
H
D
 
G
A
 
A
K
 
G
L
 
-
P
 
P
L
 
I
Q
 
I
L
 
L
Q
|
Q
E
 
S
H
 
H
G
 
G
-
 
D
-
 
P
-
 
S
S
 
E
R
 
P
V
 
I
S
 
S
F
 
F
R
 
R
N
 
N
I
 
I
W
 
W
V
 
I
R
 
R

Query Sequence

>7398304_63_256
VLYSGTPDITKWEHPDASPVKWKPEGDALTIVPKATDIRTKQKFGNIQLHLEWRTPDPSE
DKDFNRGNSGVLIMGLYELQIYESWNYNTRIYYNGQAGSVYKQHAPLVNAARKPQTWQTY
DVIFEAPVFRADKSVEKPAYMTVFHNNVLILNHVELKGPMVYQGYPKYKFHDAKLPLQLQ
EHGSRVSFRNIWVR

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SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory