SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 7401616_33_238 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
28% identity, 99% coverage: 4:206/206 of query aligns to 46:238/240 of 4qhzC

query
sites
4qhzC
L
 
V
L
 
L
F
 
F
D
 
D
G
 
G
K
 
K
D
 
D
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L
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S
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A
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W
H
 
E
A
 
S
Y
 
V
N
 
K
G
 
G
K
 
G
A
 
A
P
 
-
G
 
-
S
 
A
A
 
E
W
 
W
L
 
D
I
 
V
E
 
H
D
 
D
G
 
G
A
 
V
I
 
F
K
 
T
L
 
V
N
 
N
V
 
-
P
 
-
E
 
-
R
 
-
A
 
-
G
 
-
N
 
-
K
 
-
A
 
-
K
 
K
N
 
K
G
 
K
G
 
G
D
 
D
I
 
I
V
 
Q
T
 
T
D
 
K
E
 
Q
L
 
K
V
 
F
N
 
N
G
 
-
D
 
D
F
 
F
E
 
Q
F
 
M
K
 
H
A
 
I
E
 
E
W
 
W
K
 
Q
V
 
V
S
 
P
-
 
T
-
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
-
 
Q
K
 
S
Y
 
R
A
 
G
N
|
N
S
|
S
G
 
G
I
 
I
F
 
F
F
 
L
F
 
-
V
 
-
Q
 
-
E
 
-
S
 
-
P
 
-
K
 
-
Y
 
-
Q
 
Q
N
 
G
M
 
M
H
 
Y
N
 
-
T
 
-
G
 
-
L
 
-
E
|
E
L
 
V
Q
|
Q
V
 
V
I
 
L
D
 
D
-
 
C
-
 
Y
-
 
N
-
 
N
D
 
P
K
 
T
I
 
Y
Y
 
V
E
 
N
G
 
G
A
 
Q
K
 
T
E
 
G
N
 
S
T
 
I
H
 
Y
R
 
K
A
 
Q
S
 
S
D
 
-
F
 
-
F
 
I
G
 
P
I
 
L
A
 
A
N
 
N
A
 
A
R
 
M
L
 
R
R
 
K
E
 
P
G
 
-
N
 
-
P
 
-
Q
 
-
G
 
G
E
 
E
W
 
W
N
 
N
K
 
V
I
 
Y
H
 
D
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I
I
 
I
V
 
Y
-
 
T
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A
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P
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T
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F
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K
-
 
E
-
 
D
-
 
G
-
 
S
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Y
-
 
R
K
 
T
K
 
H
G
 
P
K
 
T
L
 
V
T
 
T
V
 
V
Y
 
I
Q
 
Q
N
 
N
E
 
G
F
 
V
M
 
V
V
 
L
Q
 
Q
E
 
N
H
 
H
D
 
T
-
 
T
-
 
I
L
 
L
N
 
G
G
 
T
A
 
T
D
 
E
W
 
W
K
 
-
Q
 
-
R
 
-
I
 
-
A
 
-
N
 
-
S
 
-
G
 
-
L
 
-
K
 
I
A
 
G
A
 
F
P
 
P
I
 
Q
A
 
V
K
 
K
G
 
K
T
 
H
Y
 
G
N
 
A
G
 
G
R
 
P
I
 
I
G
 
I
L
 
L
Q
|
Q
-
 
S
-
 
H
-
 
G
D
 
D
W
 
P
G
 
S
S
 
E
T
 
P
V
 
I
W
 
S
Y
 
F
R
 
R
N
 
N
I
 
I
N
 
W
L
 
I
R
 
R

Query Sequence

>7401616_33_238
GWKLLFDGKDLKGWHAYNGKAPGSAWLIEDGAIKLNVPERAGNKAKNGGDIVTDELVNGD
FEFKAEWKVSKYANSGIFFFVQESPKYQNMHNTGLELQVIDDKIYEGAKENTHRASDFFG
IANARLREGNPQGEWNKIHFIVKKGKLTVYQNEFMVQEHDLNGADWKQRIANSGLKAAPI
AKGTYNGRIGLQDWGSTVWYRNINLR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory