SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 7460876_127_321 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
29% identity, 100% coverage: 1:195/195 of query aligns to 44:237/240 of 4qhzC

query
sites
4qhzC
A
 
A
I
 
I
V
 
V
L
 
L
F
 
F
N
 
D
G
 
G
K
 
K
G
 
D
L
 
L
D
 
S
E
 
A
W
 
W
G
 
E
K
 
S
L
 
V
-
 
K
-
 
G
A
 
G
P
 
A
K
 
A
E
 
E
W
 
W
L
 
D
K
 
V
P
 
H
D
 
D
G
 
G
P
 
-
V
 
-
D
 
-
G
 
-
W
 
-
K
 
-
I
 
-
L
 
-
P
 
-
G
 
-
G
 
-
I
 
V
L
 
F
E
 
T
V
 
V
T
 
N
P
 
K
G
 
K
T
 
K
G
 
G
S
 
D
I
 
I
V
 
Q
T
 
T
K
 
K
K
 
Q
V
 
K
F
 
F
G
 
N
D
 
D
L
 
F
K
 
Q
L
 
M
H
 
H
F
 
I
E
 
E
C
 
W
R
 
Q
L
 
V
L
 
P
G
 
T
E
 
N
V
 
I
T
 
T
-
 
G
-
 
E
-
 
S
-
 
Q
-
 
S
-
 
R
-
 
G
N
|
N
G
x
S
G
 
G
V
 
I
Y
 
F
F
 
L
M
 
Q
S
 
G
R
 
M
Y
 
Y
E
|
E
I
 
V
N
x
Q
I
 
V
K
 
L
D
 
D
S
 
C
Y
 
Y
G
 
N
Q
 
N
I
 
-
G
 
P
G
 
T
S
 
Y
P
 
V
S
 
N
G
 
G
A
 
Q
F
 
T
G
 
G
N
 
S
I
 
I
S
 
Y
K
 
K
P
 
Q
A
 
S
D
 
-
F
 
-
Y
 
I
P
 
P
S
 
L
V
 
A
N
 
N
M
 
A
A
 
M
Y
 
R
P
 
K
P
 
P
M
 
G
V
 
E
W
 
W
Q
 
N
T
 
V
F
 
Y
D
 
D
I
 
I
E
 
I
F
 
Y
R
 
T
A
 
A
P
 
P
R
 
T
F
 
F
D
 
K
A
 
E
S
 
D
G
 
G
T
 
S
K
 
Y
K
 
R
I
 
T
E
 
H
S
 
P
A
 
T
R
 
-
I
 
V
S
 
T
I
 
V
V
 
I
H
 
Q
N
 
N
G
 
G
V
 
V
Q
 
V
T
 
L
Y
 
Q
K
 
N
D
 
H
A
 
T
P
 
-
M
 
-
E
 
-
E
 
T
V
 
I
K
 
L
G
 
G
A
 
T
T
 
T
G
 
E
I
 
W
L
 
I
G
 
G
-
 
F
-
 
P
-
 
Q
-
 
V
-
 
K
E
 
K
A
 
H
G
 
G
V
 
A
G
 
G
P
 
P
I
 
I
Y
 
I
L
 
L
Q
|
Q
E
 
S
H
 
H
G
 
G
T
 
D
A
 
P
Y
 
S
Q
 
E
-
 
P
-
 
I
-
 
S
F
 
F
R
 
R
N
 
N
I
 
I
W
 
W
V
 
I

Query Sequence

>7460876_127_321
AIVLFNGKGLDEWGKLAPKEWLKPDGPVDGWKILPGGILEVTPGTGSIVTKKVFGDLKLH
FECRLLGEVTNGGVYFMSRYEINIKDSYGQIGGSPSGAFGNISKPADFYPSVNMAYPPMV
WQTFDIEFRAPRFDASGTKKIESARISIVHNGVQTYKDAPMEEVKGATGILGEAGVGPIY
LQEHGTAYQFRNIWV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory