SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 7470545_41_248 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
29% identity, 77% coverage: 49:208/208 of query aligns to 81:237/240 of 4qhzC

query
sites
4qhzC
D
 
D
L
 
I
F
 
Q
S
 
T
S
 
K
A
 
Q
E
 
K
F
 
F
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N
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D
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D
 
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M
E
 
H
L
 
I
D
 
E
Y
 
W
M
 
Q
M
 
V
A
 
P
P
 
T
G
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
-
 
Q
-
 
S
-
 
R
S
 
G
N
|
N
S
|
S
G
 
G
I
 
I
Y
 
F
L
 
L
Q
 
Q
G
 
G
R
 
M
Y
 
Y
E
|
E
I
 
V
Q
|
Q
L
 
V
L
 
L
D
 
D
S
 
C
W
 
Y
G
 
N
T
 
N
K
 
P
A
 
T
P
 
Y
K
 
V
A
 
N
G
 
G
D
 
Q
N
 
T
G
 
G
G
 
S
I
 
I
Y
 
Y
E
 
K
R
 
Q
W
 
-
D
 
-
D
 
-
S
 
-
R
 
-
P
 
-
N
 
-
G
 
-
L
 
-
Q
 
-
G
 
-
Y
 
-
D
 
-
G
 
-
H
 
S
A
 
I
P
 
P
R
 
L
V
 
A
N
 
N
A
 
A
S
 
M
K
 
R
A
 
K
P
 
P
G
 
G
T
 
E
W
 
W
Q
 
N
H
 
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Y
K
 
D
I
 
I
S
 
I
F
 
Y
I
 
T
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A
P
 
P
R
 
T
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F
D
 
K
A
 
E
T
 
D
G
 
G
K
 
S
K
 
Y
I
 
R
A
 
T
N
 
H
A
 
P
R
 
T
M
 
V
L
 
T
L
 
V
V
 
I
E
 
Q
L
 
-
N
 
N
G
 
G
V
 
V
T
 
V
I
 
L
Q
 
Q
E
 
N
N
 
H
V
 
T
E
 
T
L
 
I
M
 
L
G
 
G
P
 
T
T
 
T
R
 
E
G
 
-
A
 
W
I
 
I
G
 
G
G
 
F
G
 
P
D
 
Q
E
 
V
K
 
K
-
 
K
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H
A
 
G
T
 
A
G
 
G
P
 
P
L
 
I
R
 
I
L
 
L
Q
|
Q
G
 
-
D
 
S
H
 
H
G
 
G
-
 
D
-
 
P
-
 
S
-
 
E
A
 
P
V
 
I
A
 
S
F
 
F
R
 
R
N
 
N
I
 
I
V
 
W
I
 
I

Query Sequence

>7470545_41_248
DLSAFREPGQSWSITSDASAKLDNPHVLDAVAGTGVLFNMPDKKHPGKDLFSSAEFGDAD
IELDYMMAPGSNSGIYLQGRYEIQLLDSWGTKAPKAGDNGGIYERWDDSRPNGLQGYDGH
APRVNASKAPGTWQHIKISFIAPRFDATGKKIANARMLLVELNGVTIQENVELMGPTRGA
IGGGDEKATGPLRLQGDHGAVAFRNIVI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory