Comparing 8499555 FitnessBrowser__Miya:8499555 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
5odcD Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus at 2.3 a resolution (see paper)
50% identity, 27% coverage: 8:140/501 of query aligns to 3:135/138 of 5odcD
7bkbF Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from methanospirillum hungatei (hexameric, composite structure) (see paper)
49% identity, 25% coverage: 10:136/501 of query aligns to 5:131/137 of 7bkbF
7bkbE Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from methanospirillum hungatei (hexameric, composite structure) (see paper)
24% identity, 61% coverage: 191:494/501 of query aligns to 39:391/411 of 7bkbE
Sites not aligning to the query:
>8499555 FitnessBrowser__Miya:8499555
MPVLKGKELRVVGFLCNWCSYGGADTAGVGRFSQPTDLRIIRVPCSGRVDPMFVVKALLG
GADGVLVSGCHPRDCHYSQGNFYARRRLETLKTFLPALGIDPDRFQYTWVSASEGQRWKN
VVSTFVEKVHQLGHAPRIEEAAPYLPLAAGGDSPRAPLRPPLRPLSYPAAGTLAASLEQL
RENIRAALPELDCVIGWQQGFDALHATPLFMRKPEDVDKLTWGPLNVHNLATYLPQFKNR
KVGVVVKGCDSRSVIELLQEKLVEPDNVRVFGMACEGVVDMTRVQRALDGTGNADGAMCA
DTAPSSVGVDGDNLSFEGEAPARLKLADVVAEKCRTCDTPVPLLGDVVEGNASAPAGPAP
DAPPSLEALDAMTPEQRRGFWRAQMDRCLRCYACRNACPMCVCRDHCIAESRDPHWTTQE
GNVREKLQFQVIHALHLAGRCTECGECQRACPVNIPVLSLKQWMNRSVRTLFDYRAGVDV
NAVPPLLAFAVEEKNIKEHGL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory