SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 8500169 FitnessBrowser__Miya:8500169 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P0AAC6 Modulator of FtsH protease YccA from Escherichia coli (strain K12) (see 2 papers)
32% identity, 59% coverage: 97:235/235 of query aligns to 87:219/219 of P0AAC6

query
sites
P0AAC6
G
 
G
I
 
Y
T
 
I
L
 
L
S
 
G
A
 
P
V
 
I
L
 
L
L
 
N
A
 
T
Y
 
Y
T
 
L
S
 
S
G
 
A
T
 
G
V
 
M
F
 
G
Q
 
D
A
 
V
F
 
I
A
 
A
T
 
M
A
 
A
A
 
L
G
 
G
-
 
G
-
 
T
-
 
A
-
 
L
M
 
V
F
 
F
G
 
F
A
 
C
M
 
C
S
 
S
L
 
A
Y
 
Y
G
 
V
L
 
L
T
 
T
T
 
T
K
 
R
K
 
K
D
 
D
L
 
M
T
 
S
S
 
F
W
 
L
G
 
G
S
 
G
F
 
M
L
 
L
F
 
M
M
 
A
G
 
G
L
 
I
I
 
V
G
 
V
I
 
V
L
 
L
I
 
I
A
 
G
S
 
M
V
 
V
V
 
A
N
 
N
I
 
I
F
 
F
V
 
L
G
 
Q
S
 
L
S
 
P
A
 
A
M
 
L
S
 
H
L
 
L
V
 
A
I
 
I
S
 
S
A
 
A
I
 
V
G
 
F
V
 
I
I
 
L
V
 
I
F
 
S
T
 
S
G
 
G
L
 
A
T
 
I
A
 
L
Y
 
F
D
 
E
S
 
T
Q
 
S
K
 
N
L
 
I
R
 
I
M
 
H
M
 
G
G
 
G
E
 
E
T
 
T
A
 
N
P
 
Y
M
 
I
D
 
-
D
 
-
A
 
-
T
 
-
A
 
-
I
 
-
R
 
-
R
 
R
G
 
A
T
 
T
I
 
V
L
 
-
G
 
-
A
 
-
L
 
-
T
 
S
L
 
L
Y
 
Y
L
 
V
D
 
S
F
 
L
I
 
Y
N
 
N
L
 
I
F
 
F
L
 
V
M
 
S
L
 
L
L
 
L
R
 
S
L
 
I
F
 
L
G
 
G
-
 
F
S
 
A
S
 
S
R
 
R
D
 
D

Sites not aligning to the query:

Query Sequence

>8500169 FitnessBrowser__Miya:8500169
MLGRTVSAPTRARAETVNAFMRGVYNWMFVGLAVTAGAAWFTASSPAMLQLVFGNSFVLI
GLILAELGLVMGISAGIARLSGGAATGLFVLYSALNGITLSAVLLAYTSGTVFQAFATAA
GMFGAMSLYGLTTKKDLTSWGSFLFMGLIGILIASVVNIFVGSSAMSLVISAIGVIVFTG
LTAYDSQKLRMMGETAPMDDATAIRRGTILGALTLYLDFINLFLMLLRLFGSSRD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory