SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 8500184 FitnessBrowser__Miya:8500184 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

1nsjA Crystal structure of phosphoribosyl anthranilate isomerase from thermotoga maritima (see paper)
31% identity, 85% coverage: 22:239/257 of query aligns to 4:203/205 of 1nsjA

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1nsjA
I
 
V
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K
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I
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1lbmA Crystal structure of phosphoribosyl anthranilate isomerase (prai) in complex with reduced 1-(o-carboxyphenylamino)-1-deoxyribulose 5- phosphate (rcdrp) (see paper)
29% identity, 85% coverage: 22:239/257 of query aligns to 4:192/194 of 1lbmA

query
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1lbmA
I
 
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-
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Y
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1piiA Three-dimensional structure of the bifunctional enzyme phosphoribosylanthranilate isomerase: indoleglycerolphosphate synthase from escherichia coli refined at 2.0 angstroms resolution (see paper)
32% identity, 61% coverage: 70:226/257 of query aligns to 298:437/452 of 1piiA

query
sites
1piiA
E
 
E
R
 
V
L
 
M
P
 
A
A
 
A
P
 
A
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P
L
 
L
L
 
Q
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Y
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A
 
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A
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K
A
 
V
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S
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A
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A
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Q
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L
E
 
Y
L
 
I
A
 
D
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T
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L
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R
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E
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A
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P
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L
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N
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G
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Q
S
 
S
P
 
L
R
 
G
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N
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V
I
 
L
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L
A
 
A
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G
G
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G
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L
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G
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A
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D
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N
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C
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E
A
 
A
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A
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C
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A
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V
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E
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S
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I
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K

Sites not aligning to the query:

Query Sequence

>8500184 FitnessBrowser__Miya:8500184
MTGGPRFAAPRLEHGASFAGLIQVAGVHDMAEALALRHAGVHAMGLPLRLPVNAEDLTEA
DAARLVAEVERLPAPPLLPVGITYIADGAEAADFCRALGLRRLQLHGPVAATELARLRRE
IPDLFLIKSLVVRADGNLPELLDTVRELAPLADAFITDTHDPATGADGATGLTHDWAVSA
ELARRSPRPVILAGGLNPDNVRAAILRVRPAGVDAHTGVEGPDGRKCPDRLLRFVAEAEQ
GFAEAGSHHPRAGLRQA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory