Comparing 8500413 FitnessBrowser__Miya:8500413 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 99% coverage: 1:252/255 of query aligns to 2:254/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 98% coverage: 1:251/255 of query aligns to 2:253/253 of 1g9xB
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
30% identity, 98% coverage: 3:252/255 of query aligns to 2:236/240 of 6mjpA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
31% identity, 98% coverage: 4:253/255 of query aligns to 3:237/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
31% identity, 98% coverage: 4:253/255 of query aligns to 3:237/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
30% identity, 98% coverage: 4:253/255 of query aligns to 4:238/241 of 6mbnA
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
32% identity, 86% coverage: 23:241/255 of query aligns to 20:228/253 of 6z5uK
Sites not aligning to the query:
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
32% identity, 86% coverage: 23:241/255 of query aligns to 22:230/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
32% identity, 86% coverage: 23:241/255 of query aligns to 22:230/263 of 7d08B
Sites not aligning to the query:
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
31% identity, 97% coverage: 4:251/255 of query aligns to 3:235/235 of 6mhzA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
30% identity, 97% coverage: 4:250/255 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
30% identity, 97% coverage: 4:250/255 of query aligns to 3:234/234 of 4p31A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
29% identity, 95% coverage: 3:243/255 of query aligns to 1:232/343 of P30750
Sites not aligning to the query:
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
30% identity, 96% coverage: 4:249/255 of query aligns to 3:233/233 of 6b8bA
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
28% identity, 98% coverage: 3:251/255 of query aligns to 6:238/240 of 1ji0A
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
29% identity, 95% coverage: 3:243/255 of query aligns to 2:233/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
29% identity, 95% coverage: 3:243/255 of query aligns to 2:233/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
29% identity, 95% coverage: 3:243/255 of query aligns to 2:233/344 of 6cvlD
3c4jA Abc protein artp in complex with atp-gamma-s
27% identity, 95% coverage: 1:243/255 of query aligns to 1:229/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
27% identity, 95% coverage: 1:243/255 of query aligns to 1:229/242 of 3c41J
>8500413 FitnessBrowser__Miya:8500413
MPLLEMKGVTQRFGGLQAVSDFNISLEERKLIALIGPNGAGKTTVFNLVSGFYQPTEGQI
IFDGKPTAGLRPHQVTARGIARTFQNIRLWHEMSVLDNIRIAQHHRLGYTIWDAFLRTGR
FTRSEGNIDTIAWEMLEAMDLKDAAHELPRNLPYGLQRRVEIARAMSIRPKLLLLDEPAA
GLNSADVDGLIKLIRWIHDEFDIAIWMIEHQMKVVMSLCEWIKVIDFGSTIAEGTPEEIQ
SNPVVIKAYLGDDTI
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory