SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 8500850 FitnessBrowser__Miya:8500850 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
32% identity, 27% coverage: 363:512/563 of query aligns to 85:236/296 of P68183

query
sites
P68183
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4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
32% identity, 23% coverage: 77:204/563 of query aligns to 279:408/490 of 4ki0F

query
sites
4ki0F
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Sites not aligning to the query:

P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
32% identity, 23% coverage: 77:204/563 of query aligns to 294:423/514 of P02916

query
sites
P02916
M
 
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Query Sequence

>8500850 FitnessBrowser__Miya:8500850
MAALAKSRSFGVAEVILAISIAVLVIVVAVPVLLIFFNAFWVDGSPNFTDVVKILRQPDT
YEALLNSLFIASGVTVMSTTIGTFFAWLVTRTDLPFKAAMKVLFLVPFMLPSFIGALAWK
MLLSPRAGYINRLFMDTFGFSGPVFDIYTYHGIMAVETMYLFPFVFIQVCGALERMDPTL
EEAARISGASLFTITRKITIPLVMPSIVSGALLIMLYSMAHFGTVAVLGIEIGIFNIPTL
IYEKIHQSAGSFQSIRTGTVLASVLVVTAAAIIWLQNKVLERGRFQIIAGKSFRPMELKL
RGFRIPLLVLCIAYIAFTIVLPTATIFLVGGLKTYGLPLTMENLTLDNYKFILFDWQLTR
DAIWNSVSLGLAAALITMFAGVMISYVIVKMKVRGKGFLEFLGMLPFSVPGSVIALGVIL
AWSGKFGINIYNTVWIILVAYIARYMAFSLKANSAALEQVHDSLVEAARACGATMWQALR
DIVLPLVRPGMLAAFFLIFLPALRELTVSVLLYGPTTRTIGVAIYTLNEDGETVYSAALA
GIALIIIVTGQTLIKRFTGGNGR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory