Comparing 8501896 DvMF_2611 ABC transporter related (RefSeq) to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
59% identity, 100% coverage: 1:234/234 of query aligns to 6:239/240 of 1ji0A
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
34% identity, 99% coverage: 2:233/234 of query aligns to 3:235/235 of 6mhzA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
34% identity, 99% coverage: 2:233/234 of query aligns to 3:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
34% identity, 99% coverage: 2:233/234 of query aligns to 3:235/238 of 6s8gA
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
32% identity, 100% coverage: 1:233/234 of query aligns to 2:235/240 of 6mjpA
6mbnA Lptb e163q in complex with atp (see paper)
34% identity, 99% coverage: 2:233/234 of query aligns to 4:236/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
34% identity, 99% coverage: 2:232/234 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
34% identity, 99% coverage: 2:232/234 of query aligns to 3:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
34% identity, 98% coverage: 2:231/234 of query aligns to 3:233/233 of 6b8bA
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
28% identity, 100% coverage: 1:233/234 of query aligns to 4:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
28% identity, 100% coverage: 1:233/234 of query aligns to 4:253/253 of 1g9xB
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
29% identity, 95% coverage: 1:222/234 of query aligns to 1:224/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
28% identity, 99% coverage: 1:232/234 of query aligns to 2:236/241 of 4u00A
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
31% identity, 85% coverage: 19:217/234 of query aligns to 270:478/501 of P04983
Sites not aligning to the query:
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
31% identity, 97% coverage: 2:229/234 of query aligns to 11:246/257 of P0AAH0
Sites not aligning to the query:
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
29% identity, 93% coverage: 1:217/234 of query aligns to 3:222/230 of 6z4wA
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
29% identity, 93% coverage: 1:217/234 of query aligns to 3:222/229 of 6z67B
Q9BZC7 ATP-binding cassette sub-family A member 2; ATP-binding cassette transporter 2; ATP-binding cassette 2; EC 7.6.2.- from Homo sapiens (Human) (see paper)
31% identity, 84% coverage: 16:212/234 of query aligns to 1006:1199/2435 of Q9BZC7
Sites not aligning to the query:
Q5SSE9 ATP-binding cassette sub-family A member 13; EC 7.6.2.- from Mus musculus (Mouse) (see paper)
29% identity, 88% coverage: 16:221/234 of query aligns to 3825:4029/5034 of Q5SSE9
Sites not aligning to the query:
P19566 Maltose/maltodextrin import ATP-binding protein MalK; EC 7.5.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
29% identity, 91% coverage: 2:213/234 of query aligns to 4:213/369 of P19566
Sites not aligning to the query:
>8501896 DvMF_2611 ABC transporter related (RefSeq)
MLELRNVNAFYGNIQALRDINLTIGQGEIVTLIGANGAGKTTTLMTVCGAVPPRTGEVLF
EGKPIHTMKPNEIVRLGISQVPEGRLIFPDLTVQENLDLGAFLRNDKDGIARDLDYIFGL
FPILAQRRKQAGGTLSGGEQQMLAISRAIMGRPRLLLLDEPSLGLAPIIIQQIFDIIRKI
NADGTTVFLVEQNANQALKIAHRAYVMETGRITLEDTAANLLVNEDVKKAYLGM
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory