SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 8502073 DvMF_2786 polar amino acid ABC transporter, inner membrane subunit (RefSeq) to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
33% identity, 34% coverage: 387:587/596 of query aligns to 16:214/214 of 4ymwC

query
sites
4ymwC
L
 
I
G
 
S
G
 
G
L
 
L
A
 
I
Y
 
M
S
 
T
L
 
L
L
 
K
M
 
L
A
 
T
V
 
F
I
 
L
A
 
A
I
 
V
S
 
T
V
 
I
S
 
G
F
 
V
F
 
L
I
 
M
G
 
G
L
 
L
A
 
F
V
 
I
G
 
A
V
 
L
G
 
M
R
 
K
S
 
M
S
 
S
S
 
S
N
 
I
R
 
K
V
 
P
F
 
I
R
 
K
I
 
L
P
 
V
C
 
A
L
 
S
L
 
S
Y
 
Y
I
 
I
E
 
E
L
 
V
I
 
I
R
 
R
G
 
G
N
 
T
P
 
P
L
 
L
I
 
L
I
 
V
V
 
Q
I
 
L
F
 
L
W
 
L
V
 
I
Y
 
Y
F
 
N
F
 
G
I
 
L
P
 
-
V
 
M
M
 
Q
F
 
F
G
 
G
T
 
M
T
 
N
L
 
I
N
 
P
V
 
A
F
 
F
W
 
T
S
 
A
A
 
G
T
 
V
W
 
S
A
 
A
L
 
L
T
 
A
A
 
I
F
x
N
T
 
S
G
 
S
A
 
A
Y
|
Y
I
 
V
A
 
A
E
 
E
I
 
I
V
 
I
R
 
R
T
 
A
G
 
G
I
 
I
Q
 
Q
N
 
A
I
 
V
P
 
D
A
 
P
G
 
G
Q
 
Q
V
 
N
E
 
E
A
 
A
A
 
A
Y
 
R
S
 
S
T
 
L
G
 
G
L
 
M
T
 
T
Y
 
H
L
 
A
Q
 
M
A
 
A
M
 
M
R
 
R
R
 
Y
I
 
V
V
 
I
L
 
I
P
 
P
Q
 
Q
A
 
A
L
 
I
K
 
K
Q
 
N
M
 
I
I
 
L
P
 
P
A
 
A
I
 
L
V
 
G
G
 
N
Q
x
E
F
 
F
I
 
I
A
 
V
I
 
M
F
 
L
K
 
K
D
x
E
T
 
S
S
 
A
L
 
I
A
 
V
F
 
S
V
 
V
L
 
I
G
 
G
V
 
F
L
 
A
E
 
D
L
 
L
T
 
T
F
 
R
V
 
Q
A
 
A
Q
 
D
G
 
I
I
 
I
N
 
Q
N
 
S
R
 
-
L
 
V
M
 
T
I
 
Y
H
 
R
P
 
Y
M
 
F
E
 
E
I
 
P
Y
 
Y
G
 
I
T
 
I
V
 
I
A
 
A
F
 
A
L
 
I
Y
 
Y
F
 
F
I
 
V
C
 
M
C
 
T
Y
 
L
S
 
T
M
 
F
S
 
S
V
 
K
F
 
L
A
 
L
A
 
S
R
 
L
L
 
F
E
 
E
R
 
R
R
 
R
L
 
L

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
33% identity, 34% coverage: 387:587/596 of query aligns to 16:214/215 of 4ymtC

query
sites
4ymtC
L
 
I
G
 
S
G
 
G
L
 
L
A
 
I
Y
 
M
S
 
T
L
 
L
L
 
K
M
 
L
A
 
T
V
 
F
I
 
L
A
 
A
I
 
V
S
 
T
V
 
I
S
 
G
F
 
V
F
 
L
I
 
M
G
 
G
L
 
L
A
 
F
V
 
I
G
 
A
V
 
L
G
 
M
R
 
K
S
 
M
S
 
S
S
 
S
N
 
I
R
 
K
V
 
P
F
 
I
R
 
K
I
 
L
P
 
V
C
 
A
L
 
S
L
 
S
Y
 
Y
I
 
I
E
 
E
L
 
V
I
 
I
R
 
R
G
 
G
N
 
T
P
|
P
L
|
L
I
 
L
I
 
V
V
 
Q
I
 
L
F
 
L
W
 
L
V
 
I
Y
 
Y
F
 
N
F
 
G
I
 
L
P
 
-
V
 
M
M
 
Q
F
 
F
G
 
G
T
 
M
T
 
N
L
 
I
N
 
P
V
 
A
F
 
F
W
 
T
S
 
A
A
 
G
T
 
V
W
 
S
A
 
A
L
 
L
T
 
A
A
 
I
F
x
N
T
 
S
G
 
S
A
 
A
Y
|
Y
I
 
V
A
 
A
E
 
E
I
 
I
V
 
I
R
 
R
T
 
A
G
 
G
I
 
I
Q
 
Q
N
 
A
I
 
V
P
 
D
A
 
P
G
 
G
Q
 
Q
V
 
N
E
 
E
A
 
A
A
 
A
Y
 
R
S
 
S
T
 
L
G
 
G
L
 
M
T
 
T
Y
 
H
L
 
A
Q
 
M
A
 
A
M
 
M
R
 
R
R
 
Y
I
 
V
V
 
I
L
 
I
P
 
P
Q
 
Q
A
 
A
L
 
I
K
 
K
Q
 
N
M
 
I
I
 
L
P
 
P
A
 
A
I
 
L
V
 
G
G
 
N
Q
x
E
F
 
F
I
 
I
A
 
V
I
x
M
F
 
L
K
|
K
D
x
E
T
 
S
S
 
A
L
 
I
A
 
V
F
 
S
V
 
V
L
 
I
G
 
G
V
 
F
L
 
A
E
 
D
L
 
L
T
 
T
F
 
R
V
 
Q
A
 
A
Q
 
D
G
 
I
I
 
I
N
 
Q
N
 
S
R
 
-
L
 
V
M
 
T
I
 
Y
H
 
R
P
 
Y
M
 
F
E
 
E
I
 
P
Y
 
Y
G
 
I
T
 
I
V
 
I
A
 
A
F
 
A
L
 
I
Y
 
Y
F
 
F
I
 
V
C
 
M
C
 
T
Y
 
L
S
 
T
M
 
F
S
 
S
V
 
K
F
 
L
A
 
L
A
 
S
R
 
L
L
 
F
E
 
E
R
 
R
R
 
R
L
 
L

Query Sequence

>8502073 DvMF_2786 polar amino acid ABC transporter, inner membrane subunit (RefSeq)
MIRYWLEKTWVQNAVLISLATFAIYYCGWVFDFGYEFKWSMLFTRNETYGVVMGAEILKG
LANTVRISLISSALALLLGTMLGLARLSLFRPLRVTATCVIEFFRNTPLLIQLFFWYFAF
PAILPDNAREALFSIQFEFWCATIGLSIYTASFMAEVIRAGLQSIPKGLLEAAYSSGLSY
FQVLRTIILPLAFRAIIPPLGSEFLNNMKNSSLAMVVGVAELTWHAQQVESLTFKGFEAT
SAATVLYLSLSLIISFILNGVNGRMRLDTAPGRSIPVLVVGALLTPLGLIRRMFIRPVTR
ALRARRRAAAQTTYTPLAAMLHQWGGYAARAAVLAGKGLFVALLAGLLYSVGKGLLGFQW
HVVFENLRSLLIWHFPTGRPDEMFLGLGGLAYSLLMAVIAISVSFFIGLAVGVGRSSSNR
VFRIPCLLYIELIRGNPLIIVIFWVYFFIPVMFGTTLNVFWSATWALTAFTGAYIAEIVR
TGIQNIPAGQVEAAYSTGLTYLQAMRRIVLPQALKQMIPAIVGQFIAIFKDTSLAFVLGV
LELTFVAQGINNRLMIHPMEIYGTVAFLYFICCYSMSVFAARLERRLSPEKVSLRM

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory