SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 8502260 FitnessBrowser__Miya:8502260 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
23% identity, 76% coverage: 65:293/301 of query aligns to 53:280/285 of 7cagA

query
sites
7cagA
L
 
L
E
 
A
N
 
N
Y
 
Y
H
 
V
Q
 
T
F
 
V
F
 
L
A
 
T
E
 
D
P
 
G
I
 
Y
Y
 
W
W
 
W
L
 
T
T
 
A
F
 
F
V
 
A
R
 
V
T
 
T
A
 
L
G
 
G
Y
 
I
S
 
T
V
 
V
L
 
V
V
 
S
T
 
V
L
 
A
L
 
I
T
 
E
F
 
F
L
 
A
V
 
L
S
 
G
L
 
L
P
 
A
V
 
L
A
 
A
F
 
L
Y
 
V
V
 
M
T
 
H
K
 
R
V
 
T
V
 
I
-
 
F
A
 
G
R
 
K
N
 
G
T
 
A
S
 
V
R
 
R
F
 
-
L
 
-
L
 
-
T
 
T
M
 
A
L
 
I
L
 
L
L
 
I
P
 
P
F
 
Y
W
 
G
V
 
I
S
 
V
E
 
T
L
 
V
V
 
A
R
 
A
V
 
S
Y
 
Y
G
 
S
W
 
W
M
 
Y
I
 
Y
L
 
A
L
 
W
R
 
T
E
 
P
-
 
G
S
 
T
G
 
G
V
 
Y
L
 
L
N
 
A
H
 
N
W
 
L
L
 
L
T
 
P
A
 
E
L
 
-
G
 
-
I
 
-
T
 
G
G
 
S
A
 
A
P
 
P
V
 
L
-
 
T
E
 
D
M
 
Q
L
 
L
Y
 
P
N
 
S
D
 
L
A
 
A
T
 
I
M
 
V
I
 
V
M
 
L
G
 
A
L
x
E
V
 
V
Y
 
W
T
x
K
S
 
T
M
 
T
L
 
P
F
 
F
M
 
M
V
 
A
V
 
L
P
 
L
L
 
L
V
 
L
S
 
A
V
 
G
L
 
L
E
 
A
S
 
L
L
 
V
D
 
P
D
 
Q
S
 
D
L
 
L
I
 
L
E
 
N
A
 
A
A
 
A
C
 
Q
D
 
V
L
 
D
G
 
G
A
 
A
G
 
G
P
 
P
W
 
W
T
 
K
I
 
R
M
 
L
R
 
T
T
 
K
I
 
V
V
 
I
V
 
L
P
 
P
H
 
M
C
 
I
M
 
K
P
 
P
G
 
A
I
 
I
M
 
L
S
 
-
G
 
-
A
 
-
I
 
V
V
 
A
V
 
L
F
 
L
M
 
F
L
x
R
T
 
T
L
 
L
G
x
D
N
 
A
Y
 
F
L
 
R
T
 
I
P
 
F
N
 
D
-
 
N
-
 
I
-
 
Y
-
 
I
L
 
L
M
 
T
G
 
G
G
 
G
K
 
S
N
 
N
S
 
D
L
 
T
W
 
G
F
 
S
T
 
V
E
 
S
Q
 
I
I
 
L
-
 
G
Y
 
Y
N
 
D
Q
 
N
F
 
L
I
 
F
A
 
K
S
 
A
F
 
F
N
 
N
W
 
V
N
 
G
Q
 
L
G
 
G
A
 
S
A
 
A
F
 
I
G
 
S
F
 
V
L
 
L
L
 
I
L
 
F
A
 
L
L
 
S
S
 
V
S
 
A
C
 
I
I
 
I
I
 
A
W
 
F
L
 
I
G
 
Y
L
 
I
R
 
K
L
 
I
T
 
F
G
 
G

Query Sequence

>8502260 FitnessBrowser__Miya:8502260
MSAAPHAAPGPSAPLKSGPGMRLTLALFLTPVVLWLGLLIVLPHLDLLIMSFRMDPAFGD
DGWSLENYHQFFAEPIYWLTFVRTAGYSVLVTLLTFLVSLPVAFYVTKVVARNTSRFLLT
MLLLPFWVSELVRVYGWMILLRESGVLNHWLTALGITGAPVEMLYNDATMIMGLVYTSML
FMVVPLVSVLESLDDSLIEAACDLGAGPWTIMRTIVVPHCMPGIMSGAIVVFMLTLGNYL
TPNLMGGKNSLWFTEQIYNQFIASFNWNQGAAFGFLLLALSSCIIWLGLRLTGQKLSRVV
Q

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory