SitesBLAST – Find functional sites

 

SitesBLAST

Comparing ABZR87_RS02730 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

8cd16 phikz014 (see paper)
79% identity, 100% coverage: 1:38/38 of query aligns to 1:38/38 of 8cd16

query
sites
8cd16
M
|
M
K
|
K
V
 
V
L
x
R
A
|
A
S
|
S
V
|
V
K
 
K
R
 
K
I
 
L
C
 
C
R
 
R
N
 
N
C
 
C
K
 
K
I
|
I
I
|
I
K
 
R
R
|
R
K
x
D
G
 
G
V
 
I
V
 
V
R
|
R
V
 
V
I
 
I
C
 
C
S
 
S
T
 
A
D
 
E
P
 
P
R
|
R
H
 
H
K
|
K
Q
 
Q
R
|
R
Q
|
Q
G
|
G

7unr8 30S ribosomal protein S6
79% identity, 100% coverage: 1:38/38 of query aligns to 1:38/38 of 7unr8

query
sites
7unr8
M
|
M
K
 
K
V
 
V
L
x
R
A
|
A
S
|
S
V
 
V
K
 
K
R
 
K
I
 
L
C
 
C
R
 
R
N
 
N
C
 
C
K
|
K
I
|
I
I
 
I
K
 
R
R
|
R
K
x
D
G
 
G
V
 
I
V
 
V
R
|
R
V
 
V
I
 
I
C
|
C
S
 
S
T
 
A
D
 
E
P
 
P
R
|
R
H
|
H
K
|
K
Q
 
Q
R
|
R
Q
|
Q
G
|
G

8a3l3 50S ribosomal protein L36 (see paper)
76% identity, 100% coverage: 1:38/38 of query aligns to 1:38/38 of 8a3l3

query
sites
8a3l3
M
|
M
K
|
K
V
|
V
L
x
R
A
|
A
S
|
S
V
|
V
K
|
K
R
 
K
I
 
L
C
|
C
R
 
R
N
 
N
C
 
C
K
 
K
I
 
I
I
 
V
K
 
K
R
|
R
K
 
D
G
 
G
V
 
V
V
 
I
R
|
R
V
 
V
I
 
I
C
|
C
S
 
S
T
 
A
D
 
E
P
 
P
R
x
K
H
|
H
K
|
K
Q
 
Q
R
|
R
Q
|
Q
G
|
G

6yst4 of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state (see paper)
76% identity, 100% coverage: 1:38/38 of query aligns to 1:38/38 of 6yst4

query
sites
6yst4
M
|
M
K
|
K
V
|
V
L
 
R
A
|
A
S
|
S
V
|
V
K
|
K
R
 
K
I
 
L
C
|
C
R
 
R
N
 
N
C
 
C
K
|
K
I
|
I
I
 
V
K
|
K
R
|
R
K
x
D
G
 
G
V
 
V
V
 
I
R
|
R
V
 
V
I
 
I
C
|
C
S
 
S
T
 
A
D
 
E
P
 
P
R
x
K
H
|
H
K
|
K
Q
 
Q
R
 
R
Q
|
Q
G
|
G

7m4v3 A. Baumannii ribosome-eravacycline complex: 50s (see paper)
74% identity, 100% coverage: 1:38/38 of query aligns to 1:38/38 of 7m4v3

query
sites
7m4v3
M
|
M
K
|
K
V
 
V
L
 
Q
A
 
A
S
|
S
V
|
V
K
 
K
R
 
K
I
 
I
C
 
C
R
 
G
N
 
S
C
 
C
K
 
K
I
 
V
I
 
I
K
x
R
R
|
R
K
x
N
G
 
G
V
 
V
V
 
I
R
|
R
V
 
V
I
 
I
C
|
C
S
 
S
T
 
A
D
 
E
P
 
P
R
 
R
H
|
H
K
|
K
Q
 
Q
R
|
R
Q
|
Q
G
|
G

8rd8ep Small ribosomal subunit protein uS5 (see paper)
66% identity, 100% coverage: 1:38/38 of query aligns to 1:38/38 of 8rd8ep

query
sites
8rd8ep
M
|
M
K
|
K
V
 
V
L
 
Q
A
|
A
S
|
S
V
|
V
K
|
K
R
 
K
I
 
I
C
 
C
R
 
G
N
 
S
C
 
C
K
|
K
I
 
V
I
 
V
K
x
R
R
|
R
K
|
K
G
 
G
V
 
R
V
 
V
R
 
H
V
 
I
I
 
I
C
 
C
S
 
T
T
 
A
D
 
E
P
|
P
R
|
R
H
 
H
K
|
K
Q
 
Q
R
|
R
Q
|
Q
G
 
G

4v61B6 Ribosomal Protein S8 (see paper)
63% identity, 100% coverage: 1:38/38 of query aligns to 1:38/38 of 4v61B6

query
sites
4v61B6
M
|
M
K
 
K
V
|
V
L
x
R
A
x
S
S
|
S
V
 
V
K
|
K
R
 
K
I
x
M
C
 
C
R
 
E
N
 
F
C
 
C
K
|
K
I
 
T
I
 
V
K
 
K
R
|
R
K
 
R
G
 
G
V
 
R
V
 
V
R
 
Y
V
 
V
I
 
I
C
 
C
S
 
S
T
 
S
D
 
N
P
|
P
R
x
K
H
 
H
K
 
K
Q
 
Q
R
|
R
Q
|
Q
G
 
G

7nhk8 50S ribosomal protein L36 (see paper)
63% identity, 100% coverage: 1:38/38 of query aligns to 1:38/38 of 7nhk8

query
sites
7nhk8
M
|
M
K
|
K
V
 
V
L
x
R
A
x
P
S
|
S
V
|
V
K
|
K
R
 
P
I
x
M
C
 
C
R
 
E
N
 
H
C
 
C
K
 
K
I
 
V
I
 
I
K
x
R
R
|
R
K
|
K
G
 
G
V
x
R
V
 
V
R
 
M
V
 
V
I
 
I
C
|
C
S
 
P
T
 
A
D
 
N
P
 
P
R
x
K
H
|
H
K
 
K
Q
 
Q
R
|
R
Q
|
Q
G
|
G

7ood2 Mycoplasma pneumoniae 50s subunit of ribosomes in chloramphenicol- treated cells (see paper)
71% identity, 100% coverage: 1:38/38 of query aligns to 1:37/37 of 7ood2

query
sites
7ood2
M
|
M
K
|
K
V
|
V
L
x
R
A
|
A
S
|
S
V
|
V
K
 
K
R
 
P
I
|
I
C
|
C
R
 
K
N
 
D
C
 
C
K
 
K
I
 
I
I
 
I
K
 
K
R
|
R
K
 
H
G
 
Q
V
 
I
V
 
V
R
 
R
V
 
V
I
 
I
C
|
C
S
 
K
T
 
T
D
 
Q
P
 
-
R
x
K
H
|
H
K
|
K
Q
 
Q
R
|
R
Q
|
Q
G
 
G

1vy4B9 50S ribosomal protein L36 (see paper)
68% identity, 100% coverage: 1:38/38 of query aligns to 1:37/37 of 1vy4B9

query
sites
1vy4B9
M
|
M
K
|
K
V
|
V
L
x
R
A
|
A
S
|
S
V
|
V
K
|
K
R
|
R
I
 
I
C
|
C
R
 
D
N
 
K
C
|
C
K
|
K
I
x
V
I
 
I
K
x
R
R
|
R
K
x
H
G
 
G
V
x
R
V
 
V
R
 
Y
V
 
V
I
 
I
C
|
C
S
 
E
T
 
-
D
 
N
P
 
P
R
x
K
H
|
H
K
|
K
Q
 
Q
R
|
R
Q
|
Q
G
|
G

1dfeA Nmr structure of ribosomal protein l36 from thermus thermophilus (see paper)
68% identity, 100% coverage: 1:38/38 of query aligns to 1:37/37 of 1dfeA

query
sites
1dfeA
M
 
M
K
 
K
V
 
V
L
 
R
A
 
A
S
 
S
V
 
V
K
 
K
R
 
R
I
 
I
C
|
C
R
 
D
N
 
K
C
|
C
K
 
K
I
 
V
I
 
I
K
 
R
R
 
R
K
 
H
G
 
G
V
 
R
V
 
V
R
 
Y
V
 
V
I
 
I
C
|
C
S
 
E
T
 
-
D
 
N
P
 
P
R
 
K
H
|
H
K
 
K
Q
 
Q
R
 
R
Q
 
Q
G
 
G

P80256 Large ribosomal subunit protein bL36; 50S ribosomal protein L36; Ribosomal protein B from Thermus thermophilus (see paper)
68% identity, 100% coverage: 1:38/38 of query aligns to 1:37/37 of P80256

query
sites
P80256
M
 
M
K
 
K
V
 
V
L
 
R
A
 
A
S
 
S
V
 
V
K
 
K
R
 
R
I
 
I
C
|
C
R
 
D
N
 
K
C
|
C
K
 
K
I
 
V
I
 
I
K
 
R
R
 
R
K
 
H
G
 
G
V
 
R
V
 
V
R
 
Y
V
 
V
I
 
I
C
|
C
S
 
E
T
 
-
D
 
N
P
 
P
R
 
K
H
|
H
K
 
K
Q
 
Q
R
 
R
Q
 
Q
G
 
G

5li08 50S ribosomal protein L36 (see paper)
68% identity, 100% coverage: 1:38/38 of query aligns to 1:37/37 of 5li08

query
sites
5li08
M
|
M
K
|
K
V
 
V
L
x
R
A
x
P
S
|
S
V
|
V
K
|
K
R
 
P
I
|
I
C
 
C
R
 
E
N
 
K
C
 
C
K
 
K
I
 
V
I
 
I
K
|
K
R
|
R
K
 
K
G
 
G
V
 
K
V
 
V
R
 
M
V
 
V
I
 
I
C
|
C
S
 
E
T
 
-
D
 
N
P
 
P
R
x
K
H
|
H
K
|
K
Q
 
Q
R
|
R
Q
|
Q
G
 
G

5o61f complete structure of the Mycobacterium smegmatis 70S ribosome (see paper)
68% identity, 100% coverage: 1:38/38 of query aligns to 1:37/37 of 5o61f

query
sites
5o61f
M
|
M
K
 
K
V
 
V
L
x
N
A
x
P
S
|
S
V
|
V
K
|
K
R
 
P
I
|
I
C
|
C
R
 
D
N
 
K
C
 
C
K
 
R
I
 
V
I
 
I
K
 
R
R
|
R
K
x
H
G
 
G
V
x
R
V
 
V
R
 
M
V
 
V
I
 
I
C
 
C
S
 
S
T
 
-
D
 
D
P
 
P
R
|
R
H
|
H
K
|
K
Q
 
Q
R
|
R
Q
|
Q
G
|
G

9c4g3 Cutibacterium acnes 50s ribosomal subunit with clindamycin bound (see paper)
66% identity, 100% coverage: 1:38/38 of query aligns to 1:37/37 of 9c4g3

query
sites
9c4g3
M
|
M
K
|
K
V
|
V
L
 
Q
A
x
P
S
|
S
V
|
V
K
|
K
R
 
K
I
|
I
C
 
C
R
 
D
N
 
K
C
 
C
K
 
K
I
 
V
I
 
I
K
 
R
R
|
R
K
x
H
G
 
G
V
 
R
V
|
V
R
 
M
V
 
V
I
 
I
C
 
C
S
 
D
T
 
-
D
 
N
P
|
P
R
|
R
H
 
H
K
|
K
Q
 
Q
R
|
R
Q
|
Q
G
 
G

4v8hB9 structure of HPF bound to the 70S ribosome. (see paper)
68% identity, 97% coverage: 2:38/38 of query aligns to 1:36/36 of 4v8hB9

query
sites
4v8hB9
K
|
K
V
 
V
L
x
R
A
|
A
S
|
S
V
|
V
K
|
K
R
|
R
I
 
I
C
|
C
R
 
D
N
 
K
C
|
C
K
|
K
I
x
V
I
 
I
K
x
R
R
|
R
K
x
H
G
 
G
V
x
R
V
 
V
R
 
Y
V
 
V
I
 
I
C
|
C
S
 
E
T
 
-
D
 
N
P
 
P
R
x
K
H
|
H
K
|
K
Q
|
Q
R
|
R
Q
|
Q
G
|
G

7as8j Bacillus subtilis ribosome quality control complex state b. Ribosomal 50s subunit with p-tRNA, rqch, and rqcp/yabo (see paper)
63% identity, 100% coverage: 1:38/38 of query aligns to 1:37/37 of 7as8j

query
sites
7as8j
M
|
M
K
|
K
V
 
V
L
x
R
A
x
P
S
|
S
V
|
V
K
|
K
R
 
P
I
 
I
C
 
C
R
 
E
N
 
K
C
 
C
K
 
K
I
 
V
I
 
I
K
x
R
R
|
R
K
|
K
G
 
G
V
 
K
V
 
V
R
 
M
V
 
V
I
 
I
C
 
C
S
 
E
T
 
-
D
 
N
P
|
P
R
x
K
H
 
H
K
 
K
Q
 
Q
R
x
K
Q
|
Q
G
|
G

3cf54 Thiopeptide antibiotic thiostrepton bound to the large ribosomal subunit of deinococcus radiodurans (see paper)
61% identity, 100% coverage: 1:38/38 of query aligns to 1:37/37 of 3cf54

query
sites
3cf54
M
|
M
K
|
K
V
 
V
L
x
R
A
x
S
S
|
S
V
|
V
K
|
K
R
x
K
I
 
M
C
 
C
R
 
D
N
 
N
C
 
C
K
|
K
I
x
V
I
 
V
K
x
R
R
|
R
K
x
H
G
 
G
V
 
R
V
|
V
R
 
L
V
 
V
I
 
I
C
 
C
S
 
S
T
 
-
D
 
N
P
x
V
R
x
K
H
 
H
K
 
K
Q
 
Q
R
|
R
Q
|
Q
G
 
G

2zjp4 Thiopeptide antibiotic nosiheptide bound to the large ribosomal subunit of deinococcus radiodurans (see paper)
61% identity, 100% coverage: 1:38/38 of query aligns to 1:37/37 of 2zjp4

query
sites
2zjp4
M
|
M
K
|
K
V
 
V
L
x
R
A
x
S
S
|
S
V
|
V
K
|
K
R
x
K
I
x
M
C
|
C
R
 
D
N
 
N
C
 
C
K
|
K
I
 
V
I
x
V
K
x
R
R
|
R
K
x
H
G
 
G
V
 
R
V
 
V
R
 
L
V
 
V
I
 
I
C
 
C
S
 
S
T
 
-
D
 
N
P
x
V
R
x
K
H
|
H
K
 
K
Q
 
Q
R
|
R
Q
|
Q
G
 
G

6ywx0 structure of the mitoribosome from Neurospora crassa with tRNA bound to the E-site (see paper)
45% identity, 100% coverage: 1:38/38 of query aligns to 1:44/46 of 6ywx0

query
sites
6ywx0
M
|
M
K
|
K
V
|
V
L
 
H
A
x
S
S
x
A
V
x
I
K
|
K
R
 
K
I
 
R
C
|
C
R
 
E
N
 
H
C
 
C
K
|
K
I
 
V
I
x
V
K
x
R
R
|
R
K
|
K
-
 
A
-
 
N
-
 
K
-
 
R
-
 
Q
-
x
N
G
 
G
V
x
Y
V
 
L
R
x
Y
V
 
I
I
 
I
C
|
C
S
 
P
T
 
A
D
 
N
P
 
P
R
|
R
H
|
H
K
|
K
Q
 
Q
R
|
R
Q
|
Q
G
|
G

Sites not aligning to the query:

Query Sequence

>ABZR87_RS02730
MKVLASVKRICRNCKIIKRKGVVRVICSTDPRHKQRQG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory