SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AO353_03250 FitnessBrowser__pseudo3_N2E3:AO353_03250 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

1kofA Crystal structure of gluconate kinase (see paper)
41% identity, 75% coverage: 9:141/177 of query aligns to 10:142/171 of 1kofA

query
sites
1kofA
V
 
V
I
 
L
M
 
M
G
 
G
V
 
V
A
x
S
G
|
G
C
 
S
G
|
G
K
|
K
S
|
S
S
x
A
V
 
V
S
 
A
E
 
S
A
 
E
L
 
V
C
 
A
Q
 
H
L
 
Q
S
 
L
G
 
H
A
 
A
T
 
A
G
 
F
I
 
L
E
 
D
G
 
G
D
 
D
T
 
F
F
 
L
H
 
H
P
 
P
A
 
R
A
 
R
N
 
N
I
 
I
E
 
E
K
 
K
M
 
M
S
 
A
A
 
S
G
 
G
I
 
E
P
 
P
L
 
L
N
 
N
D
 
D
D
 
D
D
 
D
R
 
R
A
 
K
G
 
P
W
 
W
L
 
L
D
 
Q
S
 
A
L
 
L
C
 
N
E
 
D
E
 
A
L
 
A
R
 
F
R
 
A
V
 
M
D
 
Q
A
 
R
S
 
T
G
 
N
A
 
K
R
 
V
P
 
S
V
 
L
L
 
I
T
 
V
C
 
C
S
 
S
A
 
A
L
 
L
K
 
K
H
 
K
S
 
H
Y
 
Y
R
 
R
E
 
D
R
 
L
L
 
L
R
 
R
S
 
E
A
 
G
L
 
N
P
 
P
G
 
N
L
 
L
G
 
S
F
 
F
V
 
I
F
 
Y
L
 
L
E
 
K
L
 
G
T
 
D
P
 
F
E
 
D
V
 
V
A
 
I
A
 
E
D
 
S
R
|
R
V
 
L
A
 
K
H
 
A
R
 
R
P
 
K
G
 
G
H
 
H
F
 
F
M
 
F
P
 
K
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T
T
 
Q
L
 
M
I
 
L
A
 
V
S
 
T
Q
 
Q
F
 
F
A
 
E
T
 
T
L
 
L
E
 
Q
S
 
E
P
 
P

Sites not aligning to the query:

1ko8A Crystal structure of gluconate kinase (see paper)
41% identity, 75% coverage: 9:141/177 of query aligns to 10:142/172 of 1ko8A

query
sites
1ko8A
V
 
V
I
 
L
M
 
M
G
 
G
V
 
V
A
x
S
G
 
G
C
 
S
G
 
G
K
 
K
S
 
S
S
 
A
V
 
V
S
 
A
E
 
S
A
 
E
L
 
V
C
 
A
Q
 
H
L
 
Q
S
 
L
G
 
H
A
 
A
T
 
A
G
 
F
I
 
L
E
 
D
G
 
G
D
 
D
T
 
F
F
 
L
H
 
H
P
 
P
A
 
R
A
 
R
N
 
N
I
 
I
E
 
E
K
 
K
M
 
M
S
 
A
A
 
S
G
 
G
I
 
E
P
 
P
L
 
L
N
 
N
D
 
D
D
 
D
D
 
D
R
 
R
A
 
K
G
 
P
W
 
W
L
 
L
D
 
Q
S
 
A
L
 
L
C
 
N
E
 
D
E
 
A
L
 
A
R
 
F
R
 
A
V
 
M
D
 
Q
A
 
R
S
 
T
G
 
N
A
 
K
R
 
V
P
 
S
V
 
L
L
 
I
T
 
V
C
 
C
S
 
S
A
 
A
L
 
L
K
 
K
H
 
K
S
 
H
Y
 
Y
R
 
R
E
 
D
R
 
L
L
 
L
R
 
R
S
 
E
A
 
G
L
 
N
P
 
P
G
 
N
L
 
L
G
 
S
F
 
F
V
 
I
F
 
Y
L
 
L
E
 
K
L
 
G
T
 
D
P
 
F
E
 
D
V
 
V
A
 
I
A
 
E
D
 
S
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R
V
x
L
A
 
K
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A
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K
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G
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H
F
 
F
M
 
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P
 
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Q
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L
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V
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T
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Q
F
 
F
A
 
E
T
 
T
L
 
L
E
 
Q
S
 
E
P
 
P

1ko5A Crystal structure of gluconate kinase (see paper)
41% identity, 75% coverage: 9:141/177 of query aligns to 10:142/172 of 1ko5A

query
sites
1ko5A
V
 
V
I
 
L
M
 
M
G
 
G
V
 
V
A
x
S
G
|
G
C
 
S
G
|
G
K
|
K
S
|
S
S
 
A
V
 
V
S
 
A
E
 
S
A
 
E
L
 
V
C
 
A
Q
 
H
L
 
Q
S
 
L
G
 
H
A
 
A
T
 
A
G
 
F
I
 
L
E
 
D
G
 
G
D
 
D
T
 
F
F
 
L
H
 
H
P
 
P
A
 
R
A
 
R
N
 
N
I
 
I
E
 
E
K
 
K
M
 
M
S
 
A
A
 
S
G
 
G
I
 
E
P
 
P
L
 
L
N
 
N
D
 
D
D
 
D
D
 
D
R
 
R
A
 
K
G
 
P
W
 
W
L
 
L
D
 
Q
S
 
A
L
 
L
C
 
N
E
 
D
E
 
A
L
 
A
R
 
F
R
 
A
V
 
M
D
 
Q
A
 
R
S
 
T
G
 
N
A
 
K
R
 
V
P
 
S
V
 
L
L
 
I
T
 
V
C
 
C
S
 
S
A
 
A
L
 
L
K
 
K
H
 
K
S
 
H
Y
 
Y
R
 
R
E
 
D
R
 
L
L
 
L
R
 
R
S
 
E
A
 
G
L
 
N
P
 
P
G
 
N
L
 
L
G
 
S
F
 
F
V
 
I
F
 
Y
L
 
L
E
 
K
L
 
G
T
 
D
P
 
F
E
 
D
V
 
V
A
 
I
A
 
E
D
 
S
R
|
R
V
 
L
A
 
K
H
 
A
R
|
R
P
 
K
G
 
G
H
 
H
F
 
F
M
 
F
P
 
K
S
 
T
T
 
Q
L
 
M
I
 
L
A
 
V
S
 
T
Q
 
Q
F
 
F
A
 
E
T
 
T
L
 
L
E
 
Q
S
 
E
P
 
P

Sites not aligning to the query:

Query Sequence

>AO353_03250 FitnessBrowser__pseudo3_N2E3:AO353_03250
MSQPITALVIMGVAGCGKSSVSEALCQLSGATGIEGDTFHPAANIEKMSAGIPLNDDDRA
GWLDSLCEELRRVDASGARPVLTCSALKHSYRERLRSALPGLGFVFLELTPEVAADRVAH
RPGHFMPSTLIASQFATLESPVGEPLTLALDASKHNVDELARQAHAWWLSHGLKLAG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory