SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AO353_05190 FitnessBrowser__pseudo3_N2E3:AO353_05190 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
25% identity, 94% coverage: 3:147/154 of query aligns to 501:646/650 of O31645

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O31645
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Sites not aligning to the query:

C0H3V2 Mannitol-specific phosphotransferase enzyme IIA component; EIIA; EIII; PTS system mannitol-specific EIIA component from Bacillus subtilis (strain 168) (see paper)
31% identity, 68% coverage: 39:143/154 of query aligns to 33:135/143 of C0H3V2

query
sites
C0H3V2
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P46321 Probable licABCH operon regulator; EC 2.7.1.- from Bacillus subtilis (strain 168) (see paper)
27% identity, 80% coverage: 24:146/154 of query aligns to 513:634/641 of P46321

query
sites
P46321
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V

Sites not aligning to the query:

Query Sequence

>AO353_05190 FitnessBrowser__pseudo3_N2E3:AO353_05190
MIRLENILTPGRSLVNVPGGSKKKALEQIANLIAREVPGLAMQDVFESLVAREKLGSTGF
GNGIAIPHCRLKGCESPISALMHLDAPIDFDAIDGAPVDLLFVLLVPQAATDAHLELLRQ
IASMLDRKEVRDRLRSAKSNEALYQVVLDEQNGH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory