Comparing AO353_13525 AO353_13525 ABC transporter ATP-binding protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
43% identity, 98% coverage: 1:227/232 of query aligns to 6:233/240 of 1ji0A
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
34% identity, 94% coverage: 1:219/232 of query aligns to 4:235/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
34% identity, 94% coverage: 1:219/232 of query aligns to 4:235/253 of 1g9xB
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
33% identity, 95% coverage: 1:221/232 of query aligns to 2:223/241 of 4u00A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
33% identity, 95% coverage: 1:221/232 of query aligns to 1:223/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
33% identity, 95% coverage: 1:221/232 of query aligns to 3:225/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
33% identity, 95% coverage: 1:221/232 of query aligns to 3:225/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
33% identity, 95% coverage: 1:221/232 of query aligns to 3:225/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
33% identity, 95% coverage: 1:221/232 of query aligns to 3:225/242 of 2oljA
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
28% identity, 95% coverage: 1:221/232 of query aligns to 2:223/240 of 6mjpA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
30% identity, 93% coverage: 2:216/232 of query aligns to 3:218/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
30% identity, 93% coverage: 2:216/232 of query aligns to 3:218/238 of 6s8gA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
30% identity, 93% coverage: 2:216/232 of query aligns to 3:218/235 of 6mhzA
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
30% identity, 93% coverage: 2:216/232 of query aligns to 3:218/233 of 6b8bA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
30% identity, 93% coverage: 2:216/232 of query aligns to 3:218/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
30% identity, 93% coverage: 2:216/232 of query aligns to 3:218/234 of 4p31A
6mbnA Lptb e163q in complex with atp (see paper)
30% identity, 93% coverage: 2:216/232 of query aligns to 4:219/241 of 6mbnA
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
35% identity, 84% coverage: 17:212/232 of query aligns to 268:473/501 of P04983
Sites not aligning to the query:
Q8IUA7 ATP-binding cassette sub-family A member 9; EC 7.6.2.- from Homo sapiens (Human) (see 2 papers)
31% identity, 94% coverage: 2:218/232 of query aligns to 481:700/1624 of Q8IUA7
Sites not aligning to the query:
8t1pC Heterodimeric abc transporter bmrcd in the occluded conformation bound to adpvi: bmrcd_oc-adpvi (see paper)
33% identity, 91% coverage: 14:225/232 of query aligns to 349:561/574 of 8t1pC
Sites not aligning to the query:
>AO353_13525 AO353_13525 ABC transporter ATP-binding protein
MLHVDKLHQYYGGSHILRGLSFEVKVGEVTCLLGRNGVGKTTLLKCLMGLLPAKEGAVNW
EGKPITSFKPHQRVHAGIAYVPQGREIFGRLTVEENLLMGLSRFPGSEAREVPAFIYELF
PVLLQMKQRRGGDLSGGQQQQLAIGRALASRPRLLILDEPTEGIQPSVIKEIGAVIKKLA
ARGDMAILLVEQFYDFAAELADQYLVMSRGEIVQQGRGENMEAEGVRGLVTI
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory