Comparing AO353_13560 FitnessBrowser__pseudo3_N2E3:AO353_13560 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P07821 Iron(3+)-hydroxamate import ATP-binding protein FhuC; Ferric hydroxamate uptake protein C; Ferrichrome transport ATP-binding protein FhuC; Iron(III)-hydroxamate import ATP-binding protein FhuC; EC 7.2.2.16 from Escherichia coli (strain K12) (see 2 papers)
39% identity, 87% coverage: 29:254/261 of query aligns to 31:260/265 of P07821
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
35% identity, 79% coverage: 25:230/261 of query aligns to 17:224/240 of 4ymuJ
Sites not aligning to the query:
Q5M243 Energy-coupling factor transporter ATP-binding protein EcfA1; ECF transporter A component EcfA1; EC 7.-.-.- from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (see paper)
33% identity, 83% coverage: 16:231/261 of query aligns to 11:226/276 of Q5M243
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
32% identity, 79% coverage: 27:232/261 of query aligns to 44:253/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
32% identity, 79% coverage: 27:232/261 of query aligns to 44:253/382 of 7aheC
Sites not aligning to the query:
5x40A Structure of a cbio dimer bound with amppcp (see paper)
36% identity, 79% coverage: 25:231/261 of query aligns to 21:229/280 of 5x40A
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
34% identity, 79% coverage: 25:231/261 of query aligns to 21:230/343 of P30750
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
31% identity, 79% coverage: 27:232/261 of query aligns to 44:253/260 of 7ahdC
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
33% identity, 79% coverage: 25:231/261 of query aligns to 22:231/344 of 6cvlD
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
33% identity, 79% coverage: 25:231/261 of query aligns to 22:231/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
33% identity, 79% coverage: 25:231/261 of query aligns to 22:231/344 of 3tuiC
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
33% identity, 77% coverage: 30:231/261 of query aligns to 23:225/241 of 4u00A
Sites not aligning to the query:
A5U7B7 Cell division ATP-binding protein FtsE from Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (see 2 papers)
33% identity, 78% coverage: 18:221/261 of query aligns to 6:217/229 of A5U7B7
8igqA Cryo-em structure of mycobacterium tuberculosis adp bound ftsex/ripc complex in peptidisc (see paper)
33% identity, 78% coverage: 18:221/261 of query aligns to 7:218/227 of 8igqA
8iddA Cryo-em structure of mycobacterium tuberculosis atp bound ftsex/ripc complex in peptidisc (see paper)
33% identity, 78% coverage: 18:221/261 of query aligns to 7:218/225 of 8iddA
3c4jA Abc protein artp in complex with atp-gamma-s
30% identity, 82% coverage: 25:239/261 of query aligns to 19:242/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
30% identity, 82% coverage: 25:239/261 of query aligns to 19:242/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
30% identity, 82% coverage: 25:239/261 of query aligns to 19:242/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
30% identity, 82% coverage: 25:239/261 of query aligns to 19:242/242 of 2oljA
Sites not aligning to the query:
1g291 Malk (see paper)
32% identity, 79% coverage: 25:229/261 of query aligns to 19:227/372 of 1g291
Sites not aligning to the query:
>AO353_13560 FitnessBrowser__pseudo3_N2E3:AO353_13560
MTSLNLTHLAWTPLGHGHCHHQFQLREASLHVAAGEFVGLIGPNGSGKTSLLRCAYRFSK
PESGEVHLAHHNVWKQSSRWCAQRIAVVLQEFPDAFGLTVEEVVAMGRTPHKGLFDGDTL
EDRRIAEQALESVGLKGFEDHAFATLSGGEKQRVILARALAQQPQLLILDEPTNHLDPRY
QLELLQLVKRLQIGTLASIHDLNLAAAFCDRLYVINHGRIVASGTPKEVLTTTLLREVFG
VEALIDEHPLSGYPRITWITQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory