SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AO353_13635 FitnessBrowser__pseudo3_N2E3:AO353_13635 to proteins with known functional sites using BLASTp with E ≤ 0.001.

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Found no hits to proteins with known functional sites (download)

Query Sequence

>AO353_13635 FitnessBrowser__pseudo3_N2E3:AO353_13635
MLHVLFSVYLKMLVLYSPFFVLSCFISLTRGYSRKEQRRLAWNVALATLVSSVLLYLFGR
VIFSVFGITVDAFRIGAGSVLFISALGMAQGKSAVQTDNVQQDVTIVPLTIPLTVGPGTI
GALLVMGVSQPHWDDKLTAILSIAMASLTVGVVLYLSNRIERILGDQGLQIVSRLMGLFV
CALAAQIIFTGVKGYLVP

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SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory