Comparing AO353_20815 FitnessBrowser__pseudo3_N2E3:AO353_20815 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
38% identity, 85% coverage: 32:302/317 of query aligns to 1:270/287 of 5dteB
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
35% identity, 89% coverage: 36:317/317 of query aligns to 3:270/274 of 2ioyA
1dbpA Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
33% identity, 89% coverage: 33:314/317 of query aligns to 1:265/271 of 1dbpA
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
33% identity, 84% coverage: 36:302/317 of query aligns to 5:259/270 of 4zjpA
2fn8A Thermotoga maritima ribose binding protein ribose bound form (see paper)
29% identity, 90% coverage: 33:317/317 of query aligns to 1:280/292 of 2fn8A
1rpjA Crystal structure of d-allose binding protein from escherichia coli (see paper)
33% identity, 83% coverage: 37:300/317 of query aligns to 5:269/288 of 1rpjA
1gudA Hinge-bending motion of d-allose binding protein from escherichia coli: three open conformations (see paper)
33% identity, 83% coverage: 37:300/317 of query aligns to 5:269/288 of 1gudA
Sites not aligning to the query:
8wlbA X-ray structure of enterobacter cloacae allose-binding protein in complex with d-psicose (see paper)
33% identity, 83% coverage: 37:300/317 of query aligns to 5:269/288 of 8wlbA
8wl9A X-ray structure of enterobacter cloacae allose-binding protein in complex with d-ribose (see paper)
33% identity, 83% coverage: 37:300/317 of query aligns to 5:269/288 of 8wl9A
4wutA Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220) with bound d-fucose
28% identity, 89% coverage: 35:317/317 of query aligns to 2:277/290 of 4wutA
2h3hA Crystal structure of the liganded form of thermotoga maritima glucose binding protein (see paper)
27% identity, 89% coverage: 36:316/317 of query aligns to 4:285/313 of 2h3hA
3c6qC Apo and ligand-bound form of a thermophilic glucose/xylose binding protein
27% identity, 89% coverage: 36:316/317 of query aligns to 4:285/305 of 3c6qC
5ibqA Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
29% identity, 82% coverage: 36:296/317 of query aligns to 5:256/287 of 5ibqA
4ry0A Crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose
29% identity, 82% coverage: 36:296/317 of query aligns to 5:256/287 of 4ry0A
7e7mC Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
29% identity, 89% coverage: 35:317/317 of query aligns to 10:276/284 of 7e7mC
4irxA Crystal structure of caulobacter myo-inositol binding protein bound to myo-inositol (see paper)
27% identity, 85% coverage: 35:303/317 of query aligns to 10:269/296 of 4irxA
6guqA Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with glucose
26% identity, 85% coverage: 38:305/317 of query aligns to 6:265/278 of 6guqA
6gt9A Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with galactose
26% identity, 85% coverage: 38:305/317 of query aligns to 11:270/283 of 6gt9A
4rxtA Crystal structure of carbohydrate transporter solute binding protein arad_9553 from agrobacterium radiobacter, target efi-511541, in complex with d-arabinose
30% identity, 78% coverage: 72:317/317 of query aligns to 41:282/295 of 4rxtA
Sites not aligning to the query:
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
28% identity, 89% coverage: 35:316/317 of query aligns to 7:276/287 of 4yo7A
>AO353_20815 FitnessBrowser__pseudo3_N2E3:AO353_20815
MKLPFAGRLLAVAMLAAASAALPLSSAFADTEKPKVALVMKSLANEFFLTMEDGAKAYQK
EHSADFDLISNGIKDETDTAGQTRIVEQMILAKVNALVIAPADSKAMVPVIKKAIDAGIT
VINIDNQLDPAVVKSKNMTVPFVGPDNRKGARLVGEYLAKQLKAGDEVGIIEGVSTTTNA
QARTAGFKDAMEAAQIKVVSLQSGDWEIDKGNKVAASILSEYPQTKALLAGNDSMAVGAV
SAVRAAGKAGKVQVVGYDNINAIKPMLKDGRVLATADQFAAKQAVFGIETALKMLKGEKV
DSGTNGVIETPVELVTK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory