SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AO353_21300 FitnessBrowser__pseudo3_N2E3:AO353_21300 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8rjaL Crystal structure of the f420-reducing formylmethanofuran dehydrogenase complex from the ethanotroph candidatus ethanoperedens thermophilum
36% identity, 17% coverage: 25:91/405 of query aligns to 12:73/78 of 8rjaL

query
sites
8rjaL
C
|
C
V
|
V
H
x
G
C
|
C
G
|
G
F
 
V
C
|
C
N
 
E
A
 
T
T
 
V
C
|
C
P
|
P
T
 
V
Y
 
N
Q
 
N
L
 
L
L
 
L
G
 
E
D
 
D
E
 
G
L
 
A
D
 
E
G
 
F
P
 
D
R
 
P
G
 
D
R
 
R
I
 
A
Y
 
K
L
 
L
I
x
A
K
x
I
Q
 
K
V
 
V
L
 
T
E
 
N
G
 
G
H
 
E
P
x
A
A
 
A
T
 
V
A
 
D
Q
 
E
T
 
-
Q
 
-
L
 
-
H
 
-
L
 
-
D
 
E
R
 
V
C
|
C
L
|
L
S
x
T
C
|
C
R
 
G
A
 
T
C
|
C
E
 
T
T
 
F
T
 
N
C
|
C
P
 
P
S
|
S
G
 
G
V
 
A
D
 
V
Y
 
Y

Query Sequence

>AO353_21300 FitnessBrowser__pseudo3_N2E3:AO353_21300
MQTTLSEQAKRLPRAAEAESILRTCVHCGFCNATCPTYQLLGDELDGPRGRIYLIKQVLE
GHPATAQTQLHLDRCLSCRACETTCPSGVDYHNLLDIGRAVVDQAVPRSAAQRVLRQGLR
AMAPNPGLFKALLQIGATFRPLMPRDLEAKLPRDVPPAGNWPTTVHARKVLMLEGCVQPG
LSPNTNAAAARVLDRLGISVSTVSQVGCCGALDYHLDAQEQGLNRARQNIDAWWPALENG
AEAIVQTASGCGAFIKDYGHLLKTDPAYAAKAKRVSEMSKDLVEILRNEPLERVCAATER
RIAFHCPCTLQHALKLGGAVEELLTRLGFNLTSVPDSHLCCGSAGTYSLTQPVLARQLRD
NRLNALESGRPELIVTANIGCQSHLASVGRTPVRHWIELVDQILR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory