Comparing AO353_21435 FitnessBrowser__pseudo3_N2E3:AO353_21435 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
7yleA Rndmpx in complex with dmsp (see paper)
25% identity, 91% coverage: 31:335/337 of query aligns to 5:296/299 of 7yleA
Q5LT66 Trimethylamine N-oxide-binding protein; TMAO-binding protein from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi) (see paper)
24% identity, 88% coverage: 30:325/337 of query aligns to 51:331/333 of Q5LT66
Sites not aligning to the query:
4xz6A Tmox in complex with tmao (see paper)
24% identity, 88% coverage: 30:325/337 of query aligns to 9:289/291 of 4xz6A
Q4FL33 Trimethylamine N-oxide-binding protein; TMAO-binding protein from Pelagibacter ubique (strain HTCC1062) (see paper)
23% identity, 95% coverage: 1:321/337 of query aligns to 1:309/314 of Q4FL33
P0AFM2 Glycine betaine/proline betaine-binding periplasmic protein; GBBP from Escherichia coli (strain K12) (see 2 papers)
24% identity, 77% coverage: 72:330/337 of query aligns to 72:327/330 of P0AFM2
Sites not aligning to the query:
1r9qA Structure analysis of prox in complex with proline betaine (see paper)
24% identity, 77% coverage: 72:330/337 of query aligns to 51:306/309 of 1r9qA
Sites not aligning to the query:
2rinA Abc-transporter choline binding protein in complex with acetylcholine (see paper)
23% identity, 40% coverage: 201:335/337 of query aligns to 158:281/288 of 2rinA
Sites not aligning to the query:
2regA Abc-transporter choline binding protein in complex with choline (see paper)
23% identity, 40% coverage: 201:335/337 of query aligns to 160:283/290 of 2regA
Sites not aligning to the query:
>AO353_21435 FitnessBrowser__pseudo3_N2E3:AO353_21435
MKGFRLLLGSLLATVGLLVSPVTVMAAPAPIHFADLNWESGSLITDILRIIVEKGYGLPT
DTLPGTTITLETALANNDIQVIGEEWAGRSPVWVKAEAEGKVASIGDTVKGATEGWWVPE
YVIKGDPAKGIKPLAPDLRSVSDLPRYKDVFSDPESPGKGRFLNSPIGWTSEVVNKQKLK
AYGLTDSYVNFRSGSGAALDAEITSSIRRGKPVLFYYWSPTPLLGRFKLIQLEEPPFDAE
AWKTLTDADNPNPKPTRSLPSKLSIGVSAPFQKQYPQVTEFFSKVDLPIGPLNKALAEIS
EKHTAPRQAAEAFMKAHPEVWRAWLPKDVADKVSASL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory