SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AO353_23195 FitnessBrowser__pseudo3_N2E3:AO353_23195 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

Q81RQ4 3-dehydroshikimate dehydratase; 3-DHS dehydratase; DHSase; Petrobactin biosynthesis protein AsbF; EC 4.2.1.118 from Bacillus anthracis (see paper)
23% identity, 38% coverage: 146:261/307 of query aligns to 122:236/280 of Q81RQ4

query
sites
Q81RQ4
M
 
V
N
 
N
H
 
R
I
 
I
R
 
R
A
 
M
I
 
I
A
 
C
D
 
E
L
 
L
A
 
-
W
 
F
L
 
A
E
 
Q
F
 
H
G
 
N
V
 
M
R
 
Y
T
 
V
V
 
L
I
 
L
H
x
E
P
 
T
H
|
H
A
 
P
G
 
N
G
 
T
Y
 
L
I
 
T
E
 
D
F
 
T
A
 
L
D
 
P
E
 
S
L
 
T
A
 
L
Q
 
E
L
 
L
V
 
L
A
 
G
D
 
E
I
 
V
P
 
D
Y
 
H
E
 
P
V
 
N
A
 
L
G
 
K
L
 
I
C
 
N
L
 
L
D
|
D
T
 
F
G
 
L
H
|
H
L
 
I
Y
 
W
Y
 
E
A
 
S
G
 
G
M
 
A
D
 
D
P
 
P
V
 
V
Q
 
D
T
 
S
L
 
F
R
 
Q
Q
 
Q
Y
 
L
A
 
R
D
 
P
R
 
W
L
 
I
D
 
Q
Y
 
H
L
 
Y
H
|
H
F
 
F
K
|
K
D
 
N
I
 
I
D
 
S
Q
 
S
A
 
A
V
 
D
F
 
Y
D
 
L
Q
 
H
V
 
V
L
 
F
G
 
E
E
 
P
H
 
N
I
 
N
S
 
V
F
x
Y
F
 
A
G
 
A
A
 
A
C
 
G
A
 
N
R
 
R
G
 
T
V
 
G
M
 
M
C
 
V
P
 
P
I
 
L
G
 
F
Q
 
E
G
 
G
V
 
I
I
 
V
D
 
N
Y
 
Y

Sites not aligning to the query:

3dx5A Crystal structure of the probable 3-dhs dehydratase asbf involved in the petrobactin synthesis from bacillus anthracis (see paper)
23% identity, 38% coverage: 146:261/307 of query aligns to 122:236/274 of 3dx5A

query
sites
3dx5A
M
 
V
N
 
N
H
 
R
I
 
I
R
 
R
A
 
M
I
 
I
A
 
C
D
 
E
L
 
L
A
 
-
W
 
F
L
 
A
E
 
Q
F
 
H
G
 
N
V
 
M
R
 
Y
T
 
V
V
 
L
I
 
L
H
x
E
P
 
T
H
|
H
A
 
P
G
 
N
G
 
T
Y
 
L
I
 
T
E
 
D
F
 
T
A
 
L
D
 
P
E
 
S
L
 
T
A
 
L
Q
 
E
L
 
L
V
 
L
A
 
G
D
 
E
I
 
V
P
 
D
Y
 
H
E
 
P
V
 
N
A
 
L
G
 
K
L
 
I
C
 
N
L
 
L
D
|
D
T
 
F
G
 
L
H
|
H
L
 
I
Y
 
W
Y
 
E
A
 
S
G
 
G
M
 
A
D
 
D
P
 
P
V
 
V
Q
 
D
T
 
S
L
 
F
R
 
Q
Q
 
Q
Y
 
L
A
 
R
D
 
P
R
 
W
L
 
I
D
 
Q
Y
 
H
L
 
Y
H
|
H
F
 
F
K
|
K
D
 
N
I
 
I
D
 
S
Q
 
S
A
 
A
V
 
D
F
 
Y
D
 
L
Q
 
H
V
 
V
L
x
F
G
 
E
E
 
P
H
 
N
I
 
N
S
 
V
F
x
Y
F
 
A
G
 
A
A
 
A
C
 
G
A
 
N
R
 
R
G
 
T
V
 
G
M
 
M
C
 
V
P
 
P
I
 
L
G
 
F
Q
 
E
G
 
G
V
 
I
I
 
V
D
 
N
Y
 
Y

Sites not aligning to the query:

Query Sequence

>AO353_23195 FitnessBrowser__pseudo3_N2E3:AO353_23195
MTLHISTAPCCWGVDDVNNPHLPAWQQVLSEAAQAGYRGIELGPYGYLPLDAAAVGTVLA
EQGLHVVAGTVFDNLVDPANLPNVLTQTRNICALLKQLPAVPQEPGQRFAMPCLVVIDWG
HEERDYAAGHSERAPRLAPDAWRGMMNHIRAIADLAWLEFGVRTVIHPHAGGYIEFADEL
AQLVADIPYEVAGLCLDTGHLYYAGMDPVQTLRQYADRLDYLHFKDIDQAVFDQVLGEHI
SFFGACARGVMCPIGQGVIDYRALRELITELGYQGYITVEQERDPRNARGSLRDVAASRA
YLSQAGF

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory