SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AO353_24420 FitnessBrowser__pseudo3_N2E3:AO353_24420 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
35% identity, 91% coverage: 18:218/222 of query aligns to 16:215/215 of 4ymtC

query
sites
4ymtC
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G
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x
L
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L
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Q
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-
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M
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A
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
35% identity, 90% coverage: 18:216/222 of query aligns to 16:213/214 of 4ymwC

query
sites
4ymwC
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R

Query Sequence

>AO353_24420 FitnessBrowser__pseudo3_N2E3:AO353_24420
VNYQFDLFFITSGLWPLLKGLVVTLQLTVAANIIGLTLGFVIALLVMSPNPILRWPFTLF
IEFFRCTPALVQIVWFFYCIPIIFDVYIDALTMGILAIGLNLAAFNAEAYRAAIQGVQSN
QYDATVALGLSPFQRTVYVVLPQAFRSALPVLVANGIGAFQQTALVAIVALQDLMYMGKI
LATDTYRPIEVFTVIALIYFAISFPISQLVEYIERRRKAENS

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory