SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AO353_25100 AO353_25100 glucose transporter to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 3 papers)
33% identity, 92% coverage: 28:416/425 of query aligns to 33:428/438 of P11551

query
sites
P11551
S
 
S
L
 
L
F
 
F
F
 
F
I
 
L
L
x
W
G
 
A
S
 
V
I
 
A
T
 
N
S
 
N
L
 
L
N
 
N
D
|
D
V
 
I
L
 
L
V
 
L
P
 
P
K
 
Q
L
 
F
K
 
Q
H
 
Q
L
 
A
F
 
F
S
 
T
L
 
L
S
 
T
Y
 
N
T
 
F
E
 
Q
A
 
A
M
 
G
L
 
L
V
 
I
Q
 
Q
S
 
S
S
 
A
F
 
F
F
 
Y
F
 
F
A
 
G
Y
 
Y
F
 
F
I
 
I
F
 
I
A
 
P
I
 
I
P
 
P
A
 
A
G
 
G
L
 
I
L
 
L
I
 
M
S
 
K
R
 
K
I
 
L
G
 
S
Y
 
Y
M
 
K
R
 
A
A
 
G
A
 
I
V
 
I
L
 
T
G
 
G
L
 
L
L
 
F
L
 
L
M
 
Y
A
 
A
G
 
L
G
 
G
C
 
A
L
 
A
L
 
L
F
 
F
I
 
W
P
 
P
A
 
A
T
 
A
Q
 
E
S
 
I
A
 
M
L
 
N
F
 
Y
P
 
T
A
 
L
F
 
F
L
 
L
G
 
V
A
 
G
L
 
L
F
 
F
V
 
I
L
 
I
A
 
A
I
 
A
G
 
G
V
 
L
T
 
G
T
 
C
V
 
L
Q
x
E
V
 
T
V
 
A
A
 
A
N
 
N
P
 
P
L
 
F
L
 
V
S
 
T
L
 
V
L
 
L
G
 
G
T
 
P
A
 
E
A
 
S
T
 
S
A
 
G
P
 
H
S
 
F
R
 
R
L
 
L
T
 
N
L
 
L
G
 
A
H
 
Q
A
 
T
F
 
F
N
 
N
S
 
S
L
 
F
G
 
G
T
 
A
T
 
I
V
 
I
A
 
A
P
 
V
Y
 
V
L
 
F
G
 
G
A
 
Q
I
 
S
L
 
L
I
 
I
L
 
L
G
 
S
S
 
N
L
 
V
-
 
P
-
 
H
N
 
Q
A
 
S
V
 
Q
D
 
D
T
 
V
-
 
L
S
 
D
A
 
K
L
 
M
S
 
S
P
 
P
A
 
E
E
 
Q
L
 
L
T
 
S
S
 
A
F
 
Y
L
 
K
S
 
H
Q
 
S
E
 
L
A
 
V
S
 
L
V
 
S
I
 
V
S
 
Q
N
 
T
T
 
P
Y
 
Y
A
 
M
S
 
I
I
 
I
T
 
V
L
 
A
F
 
I
I
 
V
C
 
L
M
 
L
V
 
V
A
 
A
L
 
L
I
 
L
V
 
I
W
 
M
L
 
L
-
 
T
K
 
K
R
 
F
N
 
P
E
 
A
L
 
L
Q
 
Q
P
 
S
S
 
D
T
 
N
R
 
H
P
 
S
E
 
D
R
 
A
L
 
K
N
 
Q
-
 
G
-
 
S
-
 
F
-
 
S
-
 
A
P
 
S
L
 
L
A
 
S
A
 
R
L
 
L
N
 
A
L
 
R
L
 
I
K
 
R
Q
 
H
P
 
W
R
 
R
F
 
W
A
 
A
L
 
V
G
 
-
T
 
-
A
 
L
S
 
A
I
 
Q
F
 
F
L
 
C
Y
 
Y
V
 
V
G
 
G
A
 
A
E
 
Q
V
 
T
T
 
A
I
 
C
G
x
W
S
 
S
L
 
-
I
 
-
T
 
-
D
 
-
Y
 
Y
L
 
L
M
 
I
L
 
R
P
 
Y
T
 
A
T
 
V
L
 
E
A
 
E
L
 
I
P
 
P
A
 
G
E
 
M
A
 
T
A
 
A
G
 
G
K
 
-
H
 
F
V
 
A
A
 
A
F
 
N
Y
 
Y
W
 
L
G
 
T
G
 
G
A
 
T
L
 
M
V
 
V
-
 
C
-
 
F
-
 
F
-
 
I
G
 
G
R
 
R
F
 
F
I
 
T
G
 
G
S
 
T
A
 
W
L
 
L
M
 
I
R
 
S
T
 
R
F
 
F
A
 
A
P
 
P
G
 
H
K
 
K
L
 
V
L
 
L
A
 
A
F
 
A
A
 
Y
A
 
A
T
 
L
A
 
I
V
 
A
I
 
M
V
 
A
L
 
L
L
 
C
T
 
L
I
 
I
S
 
S
A
 
A
T
 
F
T
 
A
Q
 
G
G
 
G
V
 
H
V
 
V
A
 
G
G
 
L
W
 
I
S
 
A
L
 
L
L
 
T
A
 
L
V
 
C
G
 
S
L
 
A
F
 
F
N
 
M
S
 
S
I
 
I
M
 
Q
F
 
Y
P
 
P
T
 
T
I
 
I
F
 
F
T
 
S
L
 
L
A
 
G
T
 
I
A
 
K
G
 
N
L
 
L
G
 
G
H
 
Q
R
 
D
A
 
T
A
 
K
E
 
Y
G
 
G
S
 
S
G
 
S
L
 
F
F
 
I
C
 
V
C
 
M
A
 
T
I
 
I
V
 
I
G
 
G
G
 
G
A
 
G
F
 
I
I
 
V
P
 
T
P
 
P
L
 
V
T
 
M
G
 
G
Y
 
F
A
 
V
A
 
S
D
 
D
L
 
A
S
 
A
-
 
G
T
 
N
L
 
I
A
 
P
M
 
T
A
 
A
L
 
E
S
 
L
V
 
I
P
 
P
A
 
A
T
 
L
C
 
C
Y
 
F
A
 
A
C
 
V
I
 
I
A
 
F
I
 
I
Y
 
F

Sites not aligning to the query:

Query Sequence

>AO353_25100 AO353_25100 glucose transporter
MTNASASATVSNSSATPHAQRMSTYVFSLFFILGSITSLNDVLVPKLKHLFSLSYTEAML
VQSSFFFAYFIFAIPAGLLISRIGYMRAAVLGLLLMAGGCLLFIPATQSALFPAFLGALF
VLAIGVTTVQVVANPLLSLLGTAATAPSRLTLGHAFNSLGTTVAPYLGAILILGSLNAVD
TSALSPAELTSFLSQEASVISNTYASITLFICMVALIVWLKRNELQPSTRPERLNPLAAL
NLLKQPRFALGTASIFLYVGAEVTIGSLITDYLMLPTTLALPAEAAGKHVAFYWGGALVG
RFIGSALMRTFAPGKLLAFAATAVIVLLTISATTQGVVAGWSLLAVGLFNSIMFPTIFTL
ATAGLGHRAAEGSGLFCCAIVGGAFIPPLTGYAADLSTLAMALSVPATCYACIAIYGWYA
RVPKH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory