Comparing AO353_25100 FitnessBrowser__pseudo3_N2E3:AO353_25100 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 3 papers)
33% identity, 92% coverage: 28:416/425 of query aligns to 33:428/438 of P11551
Sites not aligning to the query:
>AO353_25100 FitnessBrowser__pseudo3_N2E3:AO353_25100
MTNASASATVSNSSATPHAQRMSTYVFSLFFILGSITSLNDVLVPKLKHLFSLSYTEAML
VQSSFFFAYFIFAIPAGLLISRIGYMRAAVLGLLLMAGGCLLFIPATQSALFPAFLGALF
VLAIGVTTVQVVANPLLSLLGTAATAPSRLTLGHAFNSLGTTVAPYLGAILILGSLNAVD
TSALSPAELTSFLSQEASVISNTYASITLFICMVALIVWLKRNELQPSTRPERLNPLAAL
NLLKQPRFALGTASIFLYVGAEVTIGSLITDYLMLPTTLALPAEAAGKHVAFYWGGALVG
RFIGSALMRTFAPGKLLAFAATAVIVLLTISATTQGVVAGWSLLAVGLFNSIMFPTIFTL
ATAGLGHRAAEGSGLFCCAIVGGAFIPPLTGYAADLSTLAMALSVPATCYACIAIYGWYA
RVPKH
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory