Comparing AO353_25870 FitnessBrowser__pseudo3_N2E3:AO353_25870 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
36% identity, 48% coverage: 7:269/549 of query aligns to 3:270/330 of P0AAH4
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
34% identity, 43% coverage: 24:259/549 of query aligns to 23:258/326 of Q8RDH4
Sites not aligning to the query:
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
34% identity, 43% coverage: 24:259/549 of query aligns to 22:257/310 of 4fwiB
Sites not aligning to the query:
1vciA Crystal structure of the atp-binding cassette of multisugar transporter from pyrococcus horikoshii ot3 complexed with atp (see paper)
35% identity, 43% coverage: 300:536/549 of query aligns to 21:245/353 of 1vciA
Sites not aligning to the query:
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
34% identity, 40% coverage: 301:522/549 of query aligns to 42:263/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
34% identity, 40% coverage: 301:522/549 of query aligns to 42:263/382 of 7aheC
Sites not aligning to the query:
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
35% identity, 42% coverage: 300:529/549 of query aligns to 20:248/353 of 1oxvD
Sites not aligning to the query:
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
35% identity, 42% coverage: 300:529/549 of query aligns to 20:248/353 of 1oxvA
Sites not aligning to the query:
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
35% identity, 42% coverage: 300:529/549 of query aligns to 20:248/353 of 1oxuA
Sites not aligning to the query:
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
35% identity, 42% coverage: 300:529/549 of query aligns to 20:248/353 of Q97UY8
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
32% identity, 43% coverage: 297:531/549 of query aligns to 15:253/253 of 7z15I
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
34% identity, 40% coverage: 300:519/549 of query aligns to 41:260/260 of 7ahdC
Sites not aligning to the query:
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
32% identity, 42% coverage: 297:525/549 of query aligns to 15:247/250 of 7z18I
Sites not aligning to the query:
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
33% identity, 42% coverage: 292:524/549 of query aligns to 13:245/375 of 2d62A
P9WQI3 Trehalose import ATP-binding protein SugC; MtbSugC; Nucleotide-binding domain of SugABC transporter; NBD of SugABC transporter; SugABC transporter ATPase SugC; EC 7.5.2.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
36% identity, 41% coverage: 293:517/549 of query aligns to 10:230/393 of P9WQI3
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
31% identity, 42% coverage: 297:525/549 of query aligns to 15:247/250 of 7z16I
Sites not aligning to the query:
1g291 Malk (see paper)
32% identity, 46% coverage: 292:546/549 of query aligns to 10:273/372 of 1g291
Sites not aligning to the query:
8hplC Lpqy-sugabc in state 1 (see paper)
34% identity, 41% coverage: 294:517/549 of query aligns to 10:227/384 of 8hplC
8hprD Lpqy-sugabc in state 4 (see paper)
34% identity, 41% coverage: 294:517/549 of query aligns to 10:229/362 of 8hprD
8hprC Lpqy-sugabc in state 4 (see paper)
34% identity, 41% coverage: 294:517/549 of query aligns to 10:229/363 of 8hprC
>AO353_25870 FitnessBrowser__pseudo3_N2E3:AO353_25870
MPSPKLLLEVDHLLIRAGAEGPLAVNDLSFTVAPGEIVALVGESGSGKTMAARAAIGLLP
LPMEVCGGAIRFEGQDLHQLSCAQLRDIRGARIGMVFQEPMVSLNPAIRIGEQMAEGLRL
HTDLNKAQIRQRCIDMLTRIGITDPERCLSAYPHEFSGGMRQRIMLASVMLLRPALLIAD
EPTTALDCLAQLDVIELMLELTREQGTAILFISHDLSLVARYAHKVVVMRHGQAVEQGSI
NHILLAPQHAYTRQLLEALPKRGELAALPATDKPLVEITGVSIEHPGHARFWGKSQPKRA
VHSANLSIAPGETLALVGGSGSGKTTLGRALVGLVKPCAGEIRFKGVDILKAGQRDHRLQ
CQMIFQDPYSSLDPRMRIGETLAEPLRHLPELSEEQKRQRIATTLVDIGLSEAFMERFPH
QLSGGQRQRVAIGRALVRHPQLVIADEPISALDMTIQKQILELFERLQAQYGFACLFISH
DLAAVERIAHRVAVMHQGHIVEIGSREAVFDNPLHPYTRQLLAAASPLEQLASGGYRLRP
KPENLQPTP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory