SitesBLAST
Comparing AO353_25905 FitnessBrowser__pseudo3_N2E3:AO353_25905 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3i8bA The crystal structure of xylulose kinase from bifidobacterium adolescentis
32% identity, 90% coverage: 2:449/497 of query aligns to 1:473/506 of 3i8bA
P09099 Xylulose kinase; XK; Xylulokinase; 1-deoxy-D-xylulokinase; EC 2.7.1.17; EC 2.7.1.- from Escherichia coli (strain K12) (see paper)
33% identity, 98% coverage: 6:492/497 of query aligns to 1:474/484 of P09099
- D6 (= D11) mutation to A: Loss of activity.
- MH 77:78 (≠ QH 85:86) binding
- D233 (= D248) mutation to A: Loss of activity.
2itmA Crystal structure of the e. Coli xylulose kinase complexed with xylulose (see paper)
32% identity, 98% coverage: 6:492/497 of query aligns to 1:466/476 of 2itmA
3ll3A The crystal structure of ligand bound xylulose kinase from lactobacillus acidophilus
26% identity, 97% coverage: 8:490/497 of query aligns to 6:477/492 of 3ll3A
- binding adenosine-5'-triphosphate: G259 (= G269), T260 (≠ S270), G299 (≠ M306), P316 (vs. gap), L320 (≠ N327), G400 (= G407), G401 (= G408), F402 (≠ G409)
- binding 1-deoxy-d-xylulose-5-phosphate: H128 (≠ A135), N296 (≠ I303), E342 (= E349), A349 (vs. gap)
- binding d-xylulose: Q78 (= Q84), M79 (≠ Q85), H80 (= H86), D238 (= D248), R343 (= R350)
3ll3B The crystal structure of ligand bound xylulose kinase from lactobacillus acidophilus
26% identity, 97% coverage: 8:490/497 of query aligns to 5:475/490 of 3ll3B
- binding adenosine-5'-diphosphate: G258 (= G269), T259 (≠ S270), G298 (≠ M306), P314 (≠ S324), G399 (= G408), F400 (≠ G409), K402 (= K411)
- binding 1-deoxy-d-xylulose-5-phosphate: H127 (≠ A135), N295 (≠ I303), G338 (≠ N347), E340 (= E349), A347 (vs. gap)
3kzbA Crystal structure of xylulokinase from chromobacterium violaceum
28% identity, 89% coverage: 10:449/497 of query aligns to 9:456/498 of 3kzbA
6k76A Glycerol kinase form thermococcus kodakarensis, complex structure with substrate.
23% identity, 97% coverage: 8:489/497 of query aligns to 2:476/485 of 6k76A
5ya2A Crystal structure of lsrk-hpr complex with adp (see paper)
24% identity, 95% coverage: 4:475/497 of query aligns to 2:466/478 of 5ya2A
5ya1A Crystal structure of lsrk-hpr complex with atp (see paper)
24% identity, 95% coverage: 4:475/497 of query aligns to 2:466/478 of 5ya1A
O34154 Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 from Enterococcus faecalis (strain ATCC 700802 / V583) (see 2 papers)
22% identity, 94% coverage: 1:469/497 of query aligns to 1:472/501 of O34154
- M1 (= M1) modified: Initiator methionine, Removed
- H231 (≠ E232) modified: Phosphohistidine; by HPr
1gllO Escherichia coli glycerol kinase mutant with bound atp analog showing substantial domain motion (see paper)
23% identity, 98% coverage: 4:489/497 of query aligns to 2:487/494 of 1gllO
- binding phosphomethylphosphonic acid adenylate ester: T12 (= T14), T13 (≠ Q15), G261 (= G269), T262 (≠ S270), G305 (≠ T312), I308 (≠ V315), Q309 (≠ R316), A321 (vs. gap), G406 (= G408), N410 (≠ S412)
- binding glycerol: R82 (≠ Q85), E83 (≠ H86), Y134 (≠ G137), D240 (= D248), Q241 (≠ N249), F265 (≠ G272)
1gljO Escherichia coli glycerol kinase mutant with bound atp analog showing substantial domain motion (see paper)
23% identity, 98% coverage: 4:489/497 of query aligns to 2:487/494 of 1gljO
- binding gamma-arsono-beta, gamma-methyleneadenosine-5'-diphosphate: T12 (= T14), T13 (≠ Q15), G261 (= G269), T262 (≠ S270), G305 (≠ T312), Q309 (≠ R316), A321 (vs. gap), G406 (= G408), A407 (≠ G409)
- binding glycerol: R82 (≠ Q85), E83 (≠ H86), W102 (= W104), Y134 (≠ G137), D240 (= D248), F265 (≠ G272)
1bwfO Escherichia coli glycerol kinase mutant with bound atp analog showing substantial domain motion (see paper)
23% identity, 98% coverage: 4:489/497 of query aligns to 2:487/494 of 1bwfO
- binding phosphodifluoromethylphosphonic acid-adenylate ester: T12 (= T14), T13 (≠ Q15), T262 (≠ S270), G305 (≠ T312), I308 (≠ V315), Q309 (≠ R316), A321 (vs. gap), G406 (= G408), N410 (≠ S412)
- binding glycerol: R82 (≠ Q85), E83 (≠ H86), W102 (= W104), Y134 (≠ G137), D240 (= D248), Q241 (≠ N249), F265 (≠ G272)
2w41B Crystal structure of plasmodium falciparum glycerol kinase with adp (see paper)
21% identity, 89% coverage: 5:444/497 of query aligns to 8:456/507 of 2w41B
P0A6F3 Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 from Escherichia coli (strain K12) (see 10 papers)
23% identity, 98% coverage: 1:489/497 of query aligns to 1:493/502 of P0A6F3
- M1 (= M1) modified: Initiator methionine, Removed
- T14 (= T14) binding ; binding
- R18 (≠ K18) binding
- S59 (≠ L60) mutation to W: Abolishes inhibition of GK by FBP via disruption of the dimer-tetramer assembly reaction. Inhibition by EIIA-Glc is unchanged compared to wild type. The activity of this mutant is significantly higher than wild-type, and the Michaelis constants are increased slightly compared to wild-type.
- A66 (≠ L67) mutation to T: Although it completely abolishes FBP regulation and disrupts dimer-tetramer equilibrium, the crystal structure is essentially identical to the symmetric tetramer found in the FBP-bound form of the enzyme.
- R84 (≠ Q85) binding ; binding
- E85 (≠ H86) binding ; binding
- Y136 (≠ G137) binding ; binding
- G231 (≠ A231) mutation to D: Displays an increased enzymatic activity and a decreased allosteric regulation by FBP compared to wild-type. It displays a dimer form and is resistant to tetramer formation in the presence of FBP, whereas wild-type dimers are converted into inactive tetramers in the presence of FBP.
- K233 (≠ R233) modified: N6-malonyllysine
- G235 (= G235) binding
- R237 (≠ K239) binding ; mutation to A: Drastically reduces inhibition of GK by FBP and lowers, but did not eliminate, the ability of FBP to promote tetramer association.
- D246 (= D248) binding ; binding
- Q247 (≠ N249) binding
- T268 (≠ S270) binding
- G305 (≠ M306) mutation to S: In glpK22; abolishes glucose control of glycerol utilization.
- G311 (≠ T312) binding
- G412 (= G408) binding
- N416 (≠ S412) binding
- I475 (≠ S471) mutation to D: It decreases Vmax to about 10% of the wild-type value and the affinity for substrate is increased about two- to fourfold. This mutation decreases the catalytic activity in a manner that is analogous to that obtained upon EIIA-Glc binding. It increases the affinity for FBP about fivefold.
- E479 (≠ P475) binding
- R480 (≠ V476) mutation to D: It decreases Vmax to about 10% of the wild-type value and the affinity for substrate is increased about two- to fourfold. This mutation decreases the catalytic activity in a manner that is analogous to that obtained upon EIIA-Glc binding. Regulation by FBP is not affected by this substitution. No inhibition by EIIA-Glc is observed, which is consistent with a decrease in affinity for EIIA-Glc of about 250-fold.
2w40A Crystal structure of plasmodium falciparum glycerol kinase with bound glycerol (see paper)
21% identity, 89% coverage: 5:444/497 of query aligns to 2:450/501 of 2w40A
1gldG Cation promoted association (cpa) of a regulatory and target protein is controlled by phosphorylation (see paper)
24% identity, 98% coverage: 5:489/497 of query aligns to 1:482/489 of 1gldG
- binding adenosine-5'-diphosphate: R14 (≠ K18), G256 (= G252), T257 (≠ A253), G300 (≠ S294), A316 (≠ T312), G401 (= G408), A402 (≠ G409), N405 (≠ S412)
- binding glyceraldehyde-3-phosphate: T10 (= T14), R80 (≠ Q85), E81 (≠ H86), Y132 (≠ G137), D235 (≠ I236), F260 (vs. gap)
- binding manganese (ii) ion: D7 (= D11), R14 (≠ K18)
1glcG Cation promoted association (cpa) of a regulatory and target protein is controlled by phosphorylation (see paper)
24% identity, 98% coverage: 5:489/497 of query aligns to 1:482/489 of 1glcG
- binding adenosine-5'-diphosphate: G256 (= G252), T257 (≠ A253), G300 (≠ S294), A316 (≠ T312), G401 (= G408), A402 (≠ G409), N405 (≠ S412)
- binding glyceraldehyde-3-phosphate: T10 (= T14), R80 (≠ Q85), E81 (≠ H86), W100 (= W104), Y132 (≠ G137), D235 (≠ I236), F260 (vs. gap)
1glbG Structure of the regulatory complex of escherichia coli iiiglc with glycerol kinase (see paper)
24% identity, 98% coverage: 5:489/497 of query aligns to 1:482/489 of 1glbG
- binding adenosine-5'-diphosphate: R14 (≠ K18), G256 (= G252), T257 (≠ A253), G300 (≠ S294), I303 (≠ G297), A316 (≠ T312), G401 (= G408), A402 (≠ G409), N405 (≠ S412)
- binding glycerol: R80 (≠ Q85), E81 (≠ H86), W100 (= W104), Y132 (≠ G137), D235 (≠ I236), F260 (vs. gap)
4bc2A Crystal structure of human d-xylulokinase in complex with d-xylulose and adenosine diphosphate (see paper)
22% identity, 79% coverage: 54:444/497 of query aligns to 64:473/528 of 4bc2A
Query Sequence
>AO353_25905 FitnessBrowser__pseudo3_N2E3:AO353_25905
MSIRNLFLGIDCGTQGTKALILDSRSGKVLGQGAAAHSLISSANGRREQDPAQWLEALTL
ATRQALLAANISGREILGIGVSGQQHGLVLLDEQGQVLRPAKLWCDTETTAENQRLLAHL
GGESGSLERLGVAIAPGYTVSKLLWTEEQHPQIFARIAHILLPHDYLNYWLTGRCCSEFG
DASGTGYFNVRSRQWDLQLLRDIDPSGRLQAALPELLEAHQAVGTILPDIAERLGINPKA
LVASGGGDNMMGALGTGNIQPGAITMSLGSSGTVYAYAEQPNVSPDAAVATFCSSSGGWL
PLICTMNLTNATSAVRELFDLDLSQFNARVEQSPIGAEGVSMLPFLNGERVPALPHATGS
LLGLNMSNLTQANLCRAVVEGTTFGLRYGLDLLRHNGLQSRSIRLTGGGSKSPAWRQMVA
DIMNTPVVCTEHSEAAALGAAIQAAWCESAAGTQQSLLALCERCVSLDPSSETQPVAANV
AAYQQAYERYRQQVATL
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory