SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AO356_00475 FitnessBrowser__pseudo5_N2C3_1:AO356_00475 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
31% identity, 96% coverage: 5:216/220 of query aligns to 3:214/215 of 4ymtC

query
sites
4ymtC
L
 
V
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D
F
 
F
A
 
L
A
 
S
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M
W
 
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K
D
 
Y
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F
L
 
I
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G
L
 
L
G
 
I
L
 
M
G
 
T
L
 
L
S
 
K
L
 
L
A
 
T
L
 
F
V
 
L
S
 
A
I
 
V
A
 
T
I
 
I
G
 
G
C
 
V
V
 
L
I
 
M
G
 
G
L
 
L
A
 
F
M
 
I
A
 
A
F
 
L
A
 
M
L
 
K
L
 
M
S
 
S
K
 
S
H
 
I
R
 
K
V
 
P
L
 
I
R
 
K
V
 
L
L
 
V
A
 
A
S
 
S
V
 
S
Y
 
Y
V
 
I
T
 
E
V
 
V
I
 
I
R
 
R
N
 
G
T
 
T
P
|
P
I
x
L
L
 
L
V
 
V
L
 
Q
I
 
L
L
 
L
L
 
L
I
 
I
Y
 
Y
F
 
N
A
 
G
L
 
L
P
 
M
S
 
Q
L
 
F
G
 
G
I
 
M
R
 
N
L
 
I
D
 
P
K
 
A
L
 
F
P
 
T
S
 
A
F
 
G
V
 
V
I
 
S
T
 
A
L
 
L
S
 
A
L
 
I
Y
x
N
A
 
S
G
 
S
A
 
A
Y
|
Y
L
 
V
T
 
A
E
 
E
V
 
I
F
 
I
R
 
R
G
 
A
G
 
G
L
 
I
L
 
Q
S
 
A
I
 
V
H
 
D
K
 
P
G
 
G
Q
 
Q
R
 
N
E
 
E
A
 
A
G
 
A
L
 
R
A
 
S
I
 
L
G
 
G
L
 
M
G
 
T
E
 
H
W
 
A
Q
 
M
V
 
A
K
 
M
A
 
R
Y
 
Y
V
 
V
T
 
I
V
 
I
P
 
P
V
 
Q
M
 
A
L
 
I
R
 
K
N
 
N
V
 
I
L
 
L
P
 
P
A
 
A
L
 
L
S
 
G
N
 
N
N
x
E
F
 
F
I
 
I
S
 
V
L
x
M
F
 
L
K
|
K
D
x
E
T
 
S
S
 
A
L
 
I
A
 
V
A
 
S
A
 
V
I
 
I
A
 
G
V
 
F
P
 
A
E
 
D
L
 
L
T
 
T
Y
 
R
Y
 
Q
A
 
A
R
 
D
K
 
I
I
 
I
N
 
Q
V
 
S
E
 
V
S
 
T
Y
 
Y
R
 
R
V
 
Y
I
 
F
E
 
E
T
 
P
W
 
Y
L
 
I
V
 
I
T
 
I
T
 
A
A
 
A
L
 
I
Y
 
Y
V
 
F
A
 
V
A
 
M
C
 
T
Y
 
L
L
 
T
I
 
F
A
 
S
M
 
K
V
 
L
L
 
L
R
 
S
Y
 
L
F
 
F
E
 
E
Q
 
R
R
 
R
L
 
L

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
31% identity, 96% coverage: 5:216/220 of query aligns to 3:214/214 of 4ymwC

query
sites
4ymwC
L
 
V
N
 
D
F
 
F
A
 
L
A
 
S
V
 
M
W
 
V
R
 
K
D
 
Y
F
 
T
D
 
P
T
 
L
L
 
F
L
 
I
A
 
S
G
 
G
L
 
L
G
 
I
L
 
M
G
 
T
L
 
L
S
 
K
L
 
L
A
 
T
L
 
F
V
 
L
S
 
A
I
 
V
A
 
T
I
 
I
G
 
G
C
 
V
V
 
L
I
 
M
G
 
G
L
 
L
A
 
F
M
 
I
A
 
A
F
 
L
A
 
M
L
 
K
L
 
M
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A
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L
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A
L
 
I
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A
Y
|
Y
L
 
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A
E
 
E
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A
G
 
G
L
 
I
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A
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E
A
 
A
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A
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G
L
 
M
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H
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A
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M
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A
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A
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I
A
 
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V
 
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A
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D
L
 
L
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Q
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A
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K
 
I
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I
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Q
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E
 
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Y
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R
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Y
I
 
F
E
 
E
T
 
P
W
 
Y
L
 
I
V
 
I
T
 
I
T
 
A
A
 
A
L
 
I
Y
 
Y
V
 
F
A
 
V
A
 
M
C
 
T
Y
 
L
L
 
T
I
 
F
A
 
S
M
 
K
V
 
L
L
 
L
R
 
S
Y
 
L
F
 
F
E
 
E
Q
 
R
R
 
R
L
 
L

Query Sequence

>AO356_00475 FitnessBrowser__pseudo5_N2C3_1:AO356_00475
MNYQLNFAAVWRDFDTLLAGLGLGLSLALVSIAIGCVIGLAMAFALLSKHRVLRVLASVY
VTVIRNTPILVLILLIYFALPSLGIRLDKLPSFVITLSLYAGAYLTEVFRGGLLSIHKGQ
REAGLAIGLGEWQVKAYVTVPVMLRNVLPALSNNFISLFKDTSLAAAIAVPELTYYARKI
NVESYRVIETWLVTTALYVAACYLIAMVLRYFEQRLAIRR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory