Comparing AO356_00970 AO356_00970 LacI family transcriptional regulator to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
39% identity, 85% coverage: 33:303/319 of query aligns to 1:270/287 of 5dteB
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
35% identity, 88% coverage: 37:318/319 of query aligns to 3:270/274 of 2ioyA
1dbpA Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
34% identity, 88% coverage: 34:315/319 of query aligns to 1:265/271 of 1dbpA
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
34% identity, 84% coverage: 37:303/319 of query aligns to 5:259/270 of 4zjpA
1rpjA Crystal structure of d-allose binding protein from escherichia coli (see paper)
33% identity, 83% coverage: 38:301/319 of query aligns to 5:269/288 of 1rpjA
1gudA Hinge-bending motion of d-allose binding protein from escherichia coli: three open conformations (see paper)
33% identity, 83% coverage: 38:301/319 of query aligns to 5:269/288 of 1gudA
Sites not aligning to the query:
8wlbA X-ray structure of enterobacter cloacae allose-binding protein in complex with d-psicose (see paper)
33% identity, 83% coverage: 38:301/319 of query aligns to 5:269/288 of 8wlbA
8wl9A X-ray structure of enterobacter cloacae allose-binding protein in complex with d-ribose (see paper)
33% identity, 83% coverage: 38:301/319 of query aligns to 5:269/288 of 8wl9A
4wutA Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220) with bound d-fucose
28% identity, 89% coverage: 36:318/319 of query aligns to 2:277/290 of 4wutA
2fn8A Thermotoga maritima ribose binding protein ribose bound form (see paper)
28% identity, 89% coverage: 34:318/319 of query aligns to 1:280/292 of 2fn8A
5ibqA Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
30% identity, 82% coverage: 37:297/319 of query aligns to 5:256/287 of 5ibqA
4ry0A Crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose
30% identity, 82% coverage: 37:297/319 of query aligns to 5:256/287 of 4ry0A
2h3hA Crystal structure of the liganded form of thermotoga maritima glucose binding protein (see paper)
26% identity, 88% coverage: 37:317/319 of query aligns to 4:285/313 of 2h3hA
7e7mC Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
29% identity, 91% coverage: 30:318/319 of query aligns to 4:276/284 of 7e7mC
3c6qC Apo and ligand-bound form of a thermophilic glucose/xylose binding protein
26% identity, 88% coverage: 37:317/319 of query aligns to 4:285/305 of 3c6qC
6gt9A Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with galactose
26% identity, 87% coverage: 31:306/319 of query aligns to 3:270/283 of 6gt9A
6guqA Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with glucose
26% identity, 84% coverage: 39:306/319 of query aligns to 6:265/278 of 6guqA
2vk2A Crystal structure of a galactofuranose binding protein (see paper)
33% identity, 62% coverage: 82:278/319 of query aligns to 45:245/296 of 2vk2A
Sites not aligning to the query:
P39325 Galactofuranose-binding protein YtfQ from Escherichia coli (strain K12) (see 2 papers)
33% identity, 62% coverage: 82:278/319 of query aligns to 67:267/318 of P39325
Sites not aligning to the query:
4irxA Crystal structure of caulobacter myo-inositol binding protein bound to myo-inositol (see paper)
28% identity, 84% coverage: 36:304/319 of query aligns to 10:269/296 of 4irxA
>AO356_00970 AO356_00970 LacI family transcriptional regulator
MKLPFAGRLLAVAMLAAASAALPISSAFAQTAEKPKVALVMKSLANEFFLTMEDGAKAYQ
KEHSADFDLISNGIKDETDTANQIRIVEQMIVSKVDALIIAPADSKAMVPVIKKAVDAGI
TVINIDNQLDPAVVKSKNINVPFVGPDNRKGARLVGEYLAKQLKAGDEVGIIEGVSTTTN
AQARTAGFKDAMEAAQVKVVSLQSGDWEINKGNQVAASMLSEYPNIKALLAGNDSMAVGA
VSAVRAAGKAGKVQVVGYDNINAIKPMLKDGRVLATADQFAAKQAVFGIETALKMLKGEK
VDSGTNGVIETPVELVTKP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory