SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AO356_01645 FitnessBrowser__pseudo5_N2C3_1:AO356_01645 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
26% identity, 91% coverage: 5:267/289 of query aligns to 2:266/285 of 7cagA

query
sites
7cagA
D
 
D
A
 
K
M
 
K
R
 
S
R
 
E
G
 
R
R
 
R
Q
 
L
G
 
A
Y
 
F
L
 
W
M
 
L
S
 
I
A
 
A
P
 
P
A
 
A
L
 
V
A
 
L
L
 
L
Y
 
M
L
 
L
G
 
A
L
 
V
L
 
T
V
 
A
I
 
Y
P
 
P
L
 
I
G
 
G
L
 
Y
T
 
A
L
 
V
V
 
W
L
 
L
S
 
S
F
 
L
N
 
Q
V
 
R
F
 
Y
D
 
N
Y
 
L
S
 
A
S
 
E
G
 
P
I
 
H
D
 
D
G
 
T
D
 
E
A
 
F
Y
 
I
T
 
G
F
 
L
E
 
A
H
 
N
Y
 
Y
T
 
V
S
 
T
L
 
V
L
 
L
G
 
T
D
 
D
P
 
G
Y
 
Y
F
 
W
Y
 
W
E
 
T
I
 
A
F
 
F
L
 
A
R
 
V
T
 
T
F
 
L
W
 
G
I
 
I
S
 
T
A
 
V
L
 
V
T
 
S
T
 
V
V
 
A
L
 
I
C
 
E
V
 
F
L
 
A
I
 
L
G
 
G
V
 
L
P
 
A
E
 
L
A
 
A
Y
 
L
I
 
V
L
 
M
S
 
H
R
 
R
-
 
T
-
 
I
M
 
F
G
 
G
A
 
-
P
 
-
W
 
-
R
 
K
S
 
G
I
 
A
F
 
V
L
 
R
I
 
T
L
 
A
I
 
I
L
 
L
T
 
I
P
 
P
L
 
Y
L
 
G
I
 
I
S
 
V
V
 
T
V
 
V
V
 
A
R
 
A
A
 
S
F
 
Y
G
 
S
W
 
W
-
 
Y
-
 
Y
S
 
A
L
 
W
L
 
T
L
 
P
G
 
G
A
 
T
D
 
G
G
 
Y
L
 
L
I
 
A
N
 
N
Q
 
-
A
 
-
L
 
L
Q
 
L
A
 
P
L
 
E
G
 
G
S
 
S
A
 
A
P
 
P
M
 
L
K
 
T
L
 
D
L
 
Q
Y
 
L
T
 
P
P
 
S
F
 
L
A
 
A
V
 
I
V
 
V
I
 
V
-
 
L
A
 
A
L
x
E
V
 
V
H
 
W
V
x
K
M
 
T
L
 
T
P
 
P
F
 
F
M
 
M
I
 
A
I
 
L
P
 
L
V
 
L
W
 
L
T
 
A
S
 
G
L
 
L
Q
 
A
K
 
L
L
 
V
D
 
P
P
 
Q
A
 
D
A
 
L
E
 
L
Q
 
N
A
 
A
A
 
A
L
 
Q
S
 
V
L
 
D
G
 
G
A
 
A
S
 
G
Q
 
P
F
 
W
T
 
K
V
 
R
I
 
L
R
 
T
K
 
K
I
 
V
V
 
I
L
 
L
P
 
P
Q
 
M
I
 
I
M
 
K
P
 
P
G
 
A
V
 
I
L
 
L
S
 
V
G
 
A
-
 
L
-
 
L
-
 
F
-
x
R
T
 
T
L
 
L
I
x
D
V
 
A
F
 
F
G
 
R
L
 
I
A
 
F
A
 
D
S
 
N
S
 
I
F
 
Y
A
 
I
I
 
L
P
 
T
G
 
G
L
 
-
L
 
-
G
 
G
G
 
S
R
 
N
R
 
D
L
 
T
K
 
G
M
 
S
V
 
V
A
 
S
T
 
I
L
 
L
I
 
G
Y
 
Y
D
 
D
Q
 
N
Y
 
L
L
 
F
S
 
K
E
 
A
L
 
F
N
 
N
W
 
V
P
 
G
M
 
L
G
 
G
A
 
S
A
 
A
I
 
I
A
 
S
V
 
V
A
 
L
L
 
I
L
 
F
L
 
L

Query Sequence

>AO356_01645 FitnessBrowser__pseudo5_N2C3_1:AO356_01645
MKLIDAMRRGRQGYLMSAPALALYLGLLVIPLGLTLVLSFNVFDYSSGIDGDAYTFEHYT
SLLGDPYFYEIFLRTFWISALTTVLCVLIGVPEAYILSRMGAPWRSIFLILILTPLLISV
VVRAFGWSLLLGADGLINQALQALGSAPMKLLYTPFAVVIALVHVMLPFMIIPVWTSLQK
LDPAAEQAALSLGASQFTVIRKIVLPQIMPGVLSGTLIVFGLAASSFAIPGLLGGRRLKM
VATLIYDQYLSELNWPMGAAIAVALLLLNLLIMLSWNRMIEGRYKKSLG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory