Comparing AO356_07325 AO356_07325 PTS fructose transporter subunit IIBC to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 2 hits to proteins with known functional sites (download)
P20966 PTS system fructose-specific EIIB'BC component; EIIB'BC-Fru; EC 2.7.1.202 from Escherichia coli (strain K12) (see paper)
68% identity, 77% coverage: 122:570/580 of query aligns to 105:556/563 of P20966
O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
45% identity, 77% coverage: 122:567/580 of query aligns to 2:459/650 of O31645
>AO356_07325 AO356_07325 PTS fructose transporter subunit IIBC
MKLAIVTACPNGMVTSVLCARLLDAAAQRQGWSTSVEVHDAAHPERQLSAATLEAAEWVL
LVASGPVDLSRFVGKRVFRSTPALALQDVDAVLRRGAVEAEVLGEADASAQVPAASAERA
PRLVAITACPTGVAHTFMAAEALQQAATKLGYDLQVETQGSVGARNPLSAEAIAEADVVL
LATDIEVATERFAGKKIYRCGTGIALKQAEATLNKALVEARQESASSGASAPAKSEKTGA
YKHLLTGVSFMLPMVVAGGLMIALSFVFGIEAFKEPGTLAAALMQIGGETAFKLMVPLLA
GYIAYSIADRPGLAPGMIGGMLASTLGAGFIGGIIAGFLAGYAAKAISRYARLPQSLEAL
KPILIIPLLASLFTGLVMIYIVGKPVAGMLEALTHFLDSMGTTNAILLGVLLGAMMCVDL
GGPINKAAYAFSVGLLASQSYAPMAAAMAAGMVPPIGLGIATFIARRKFAQTEREAGKAA
LVLGLCFISEGAIPFAAKDPLRVIPASIAGGALTGALSMYFGCKLMAPHGGLFVMLIPNA
INHALLYLLAIVAGSLLTAVAYALLKRPEVVEMALEPAKA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory