SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AO356_22300 FitnessBrowser__pseudo5_N2C3_1:AO356_22300 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P0AFF4 Nucleoside permease NupG; Nucleoside-transport system protein NupG from Escherichia coli (strain K12) (see paper)
32% identity, 98% coverage: 3:405/410 of query aligns to 2:409/418 of P0AFF4

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P0AFF4
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V

Query Sequence

>AO356_22300 FitnessBrowser__pseudo5_N2C3_1:AO356_22300
MTTMNARLSVMMFLQFFIWGGWFVTLGTFLSSTLGASGGQIGMAFSTQSWGAIIAPFVIG
LIADRFFNAERILAVLHLLGAVLLYQLYSAADFSVFYPYVLVYMVVYMPTLALVNSVAFR
QMRDPALEFSRIRVWGTIGWIVAGVVISFVFAWDSREAISAGGLRNTFLMAAIASLVLGL
YSFTLPATAPLKEQASAGGVKQLLGLDALGLLKDRSYLVFFIASILICIPLAFYYQNANP
FLAETGMTNPTAKMAIGQVSEVLFMLLLPLFIQRFGIKLALLVGMLAWALRYVLFAYGNN
GDLAFMLFTGIALHGICYDFFFVSGQIYTDAKAPERFRSSAQGLITLATYGVGMLIGFWV
AGQVTDHFVVAGGHDWQSIWLFPAGFALLVLVCFLFTFRGQQALVAPSKA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory