Comparing AO356_24450 FitnessBrowser__pseudo5_N2C3_1:AO356_24450 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
38% identity, 48% coverage: 6:263/536 of query aligns to 3:264/330 of P0AAH4
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
38% identity, 48% coverage: 6:260/536 of query aligns to 4:257/326 of Q8RDH4
Sites not aligning to the query:
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
38% identity, 48% coverage: 6:260/536 of query aligns to 3:256/310 of 4fwiB
Sites not aligning to the query:
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
38% identity, 48% coverage: 274:529/536 of query aligns to 2:248/253 of 7z15I
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
38% identity, 48% coverage: 274:529/536 of query aligns to 2:248/250 of 7z18I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
37% identity, 48% coverage: 274:529/536 of query aligns to 2:248/250 of 7z16I
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
31% identity, 45% coverage: 291:529/536 of query aligns to 10:245/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
31% identity, 45% coverage: 291:529/536 of query aligns to 11:246/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
31% identity, 45% coverage: 291:529/536 of query aligns to 11:246/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
31% identity, 45% coverage: 291:529/536 of query aligns to 11:246/344 of 6cvlD
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
32% identity, 47% coverage: 274:526/536 of query aligns to 1:237/241 of 4u00A
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
34% identity, 43% coverage: 293:520/536 of query aligns to 24:243/378 of P69874
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
34% identity, 44% coverage: 25:258/536 of query aligns to 18:238/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
34% identity, 44% coverage: 25:258/536 of query aligns to 18:238/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
34% identity, 44% coverage: 25:258/536 of query aligns to 18:238/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
34% identity, 44% coverage: 25:258/536 of query aligns to 18:238/242 of 2oljA
Sites not aligning to the query:
Q5M243 Energy-coupling factor transporter ATP-binding protein EcfA1; ECF transporter A component EcfA1; EC 7.-.-.- from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (see paper)
35% identity, 45% coverage: 6:246/536 of query aligns to 1:225/276 of Q5M243
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
33% identity, 43% coverage: 6:236/536 of query aligns to 3:220/226 of 5xu1B
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
31% identity, 45% coverage: 288:526/536 of query aligns to 29:264/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
31% identity, 45% coverage: 288:526/536 of query aligns to 29:264/382 of 7aheC
Sites not aligning to the query:
>AO356_24450 FitnessBrowser__pseudo5_N2C3_1:AO356_24450
MNQDNLIEVRDLAVEFIVGERRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLL
PYPLAHHPTGTIQYAGQDLLGLKEKTIRHIRGNRIAMIFQEPMTSLNPLHCIEKQINEVL
GIHKGLSGKVATRRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLI
ADEPTTALDVTVQLKILQLLKELQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVEQA
SCEELFRAPQHPYTRELLGAEPSGTPANNVVGPPLLQVEDLKVWFPIKKGLFKRTVDYIK
AVDGIRFSLPQGQTLGIVGESGSGKSTLGLAILRLIGSQGGIRFEGKPLDSLTQQQVRPL
RREMQVVFQDPFGSLSPRMCVSQIVGEGLRIHKIGTAAEQEQAIIAALKEVGLDPETRNR
YPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQTKYNLTYLF
ISHDLAVVKALSHQLMVVKHGQVVEQGDARSIFAAPQHPYTQQLLEAAFLAPTTAE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory