Comparing AO356_25540 FitnessBrowser__pseudo5_N2C3_1:AO356_25540 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
5i39A High resolution structure of l-amino acid deaminase from proteus vulgaris with the deletion of the specific insertion sequence (see paper)
23% identity, 83% coverage: 28:384/432 of query aligns to 24:364/383 of 5i39A
Q8GAI3 4-methylaminobutanoate oxidase (formaldehyde-forming); MABO; Demethylating gamma-N-methylaminobutyrate oxidase; Gamma-N-methylaminobutyrate oxidase 1; EC 1.5.3.19 from Paenarthrobacter nicotinovorans (Arthrobacter nicotinovorans) (see paper)
23% identity, 84% coverage: 31:394/432 of query aligns to 28:391/824 of Q8GAI3
>AO356_25540 FitnessBrowser__pseudo5_N2C3_1:AO356_25540
MINIETPTYYTATKKYNLSFPTLEQDVEADVVVIGGGFSGINTALELAEKGITNIVVLEA
RYLGFGGTGRNGGQIMAGIGHDLEKIKKDVGEDGLRQVFEISDLGADIIKDRIAKYAIDA
DFCHGYGYMGFNARQEKTLRAWEKDFKSINSKHEIRFLGGSDVQQIIGSKAYSSALLHMG
GGHVHSLNLLLGEAKAVVSHGVRIFENSPALEVSYGERITVRTGRGSVRASKLLWACDSF
LNKLEPELHRSTINTYAFQMMTEPLSDELIQRISPIRGAYSDIRPVIDYYRVTNENRLLF
GAATPLVEHIPQDLKAWNRRLMLKIFPYLKDVKIDLAWGGPMACSPNLFPQIGTLPGRSN
AFFVQGYSGFGVTPSHIICKVLAEGMSEGSARYDLVSSIHRPTIIGKDAIRPLLLTAGKS
WHQLSGYWNGRR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory