Comparing AO356_26930 FitnessBrowser__pseudo5_N2C3_1:AO356_26930 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
5z0qC Crystal structure of ovob (see paper)
43% identity, 99% coverage: 3:380/382 of query aligns to 1:377/379 of 5z0qC
4dq6A Crystal structure of plp-bound putative aminotransferase from clostridium difficile 630
34% identity, 99% coverage: 1:378/382 of query aligns to 1:387/388 of 4dq6A
6qp3A Crystal structure of the plp-bound c-s lyase from bacillus subtilis (strain 168) (see paper)
37% identity, 98% coverage: 3:378/382 of query aligns to 1:386/387 of 6qp3A
3b1eA Crystal structure of betac-s lyase from streptococcus anginosus in complex with l-serine: alpha-aminoacrylate form (see paper)
34% identity, 97% coverage: 3:374/382 of query aligns to 3:381/387 of 3b1eA
3b1dA Crystal structure of betac-s lyase from streptococcus anginosus in complex with l-serine: external aldimine form (see paper)
34% identity, 97% coverage: 3:374/382 of query aligns to 3:381/387 of 3b1dA
3b1cA Crystal structure of betac-s lyase from streptococcus anginosus: internal aldimine form (see paper)
34% identity, 97% coverage: 3:374/382 of query aligns to 3:381/387 of 3b1cA
6qp2A Crystal structure of the plp-bound c-s lyase from staphylococcus hominis (see paper)
32% identity, 98% coverage: 3:378/382 of query aligns to 1:378/383 of 6qp2A
6qp1B Crystal structure of the plp-bound c-s lyase in the external aldimine form from staphylococcus hominis complexed with an inhibitor, l- cycloserine. (see paper)
31% identity, 99% coverage: 1:378/382 of query aligns to 6:397/398 of 6qp1B
1c7oA Crystal structure of cystalysin from treponema denticola contains a pyridoxal 5'-phosphate-l-aminoethoxyvinylglycine complex (see paper)
30% identity, 99% coverage: 1:379/382 of query aligns to 1:391/394 of 1c7oA
1c7nA Crystal structure of cystalysin from treponema denticola contains a pyridoxal 5'-phosphate cofactor (see paper)
30% identity, 99% coverage: 1:379/382 of query aligns to 1:391/394 of 1c7nA
8bobA Structural basis for negative regulation of the maltose system (see paper)
33% identity, 99% coverage: 3:380/382 of query aligns to 2:388/390 of 8bobA
P23256 Protein MalY; EC 4.4.1.13 from Escherichia coli (strain K12) (see 2 papers)
33% identity, 99% coverage: 3:380/382 of query aligns to 2:388/390 of P23256
3l8aB Crystal structure of metc from streptococcus mutans
32% identity, 97% coverage: 3:374/382 of query aligns to 2:379/385 of 3l8aB
7qugA Crystal structure of carbon-sulfur lyase fnapatb1 from fusobacterium nucleatum subspecies animalis in complex with allyl-cysteine (see paper)
30% identity, 99% coverage: 3:381/382 of query aligns to 2:397/397 of 7qugA
5verA Mouse kynurenine aminotransferase iii, re-refinement of the PDB structure 3e2z (see paper)
28% identity, 67% coverage: 72:328/382 of query aligns to 73:343/410 of 5verA
Sites not aligning to the query:
5vepA Mouse kynurenine aminotransferase iii, re-refinement of the PDB structure 3e2f (see paper)
28% identity, 67% coverage: 72:328/382 of query aligns to 73:343/410 of 5vepA
Sites not aligning to the query:
3e2zA Crystal structure of mouse kynurenine aminotransferase iii in complex with kynurenine (see paper)
28% identity, 67% coverage: 72:328/382 of query aligns to 73:343/410 of 3e2zA
Sites not aligning to the query:
3e2yA Crystal structure of mouse kynurenine aminotransferase iii in complex with glutamine (see paper)
28% identity, 67% coverage: 72:328/382 of query aligns to 73:343/410 of 3e2yA
Sites not aligning to the query:
5yhvA Crystal structure of an aminotransferase from mycobacterium tuberculosis
29% identity, 84% coverage: 55:374/382 of query aligns to 68:387/394 of 5yhvA
P96847 Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
29% identity, 84% coverage: 55:374/382 of query aligns to 62:381/388 of P96847
>AO356_26930 FitnessBrowser__pseudo5_N2C3_1:AO356_26930
MTFDFDTVLERHGTGSTKWSRYPADVLPMWVADMDFPAPPVVIDALHKRLEHPMLGYSVA
QDNLRAAIVADLWGKYAWRVEPQQIVFLPGVEPGFNMALRALVEPRQNVVVQVPNYPPLR
HAPGHWQLNKVELPFTPVKGEFHTPLTALREALQGGGALLLSNPHNPLGKVFGREELKAV
ADICLAQDAWIISDEIHAELCFDGRVHIPTASLSPEIAERTITLMSASKAYNIAGLKTSF
AIIQNAKLRERVNNARAGMVDSVNAFGLEATRAAYSEAGPWLEALKAYLQANRDYLVEAV
STRLPGITMTVPQGTYLAWLDCSGLGLDDPQGFFLKEAKVGLSAGLDFADDAGQFVRLNF
GCPRALLEEGLARMERSLKARG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory