Comparing AO356_27110 FitnessBrowser__pseudo5_N2C3_1:AO356_27110 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
28% identity, 89% coverage: 20:228/236 of query aligns to 16:214/215 of 4ymtC
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
28% identity, 89% coverage: 20:228/236 of query aligns to 16:214/214 of 4ymwC
>AO356_27110 FitnessBrowser__pseudo5_N2C3_1:AO356_27110
MIELLQEYWRSFVYSDGQQITGLAMTLWLLSASLFIGFIVSIPLSIARVSPRFYVRWPVQ
FYTYLFRGTPLYIQLLICYTGIYSLAAIRAQPLLDAFFRDAMNCTILAFALNTCAYTTEI
FAGAIRNIAHGEVEAAKAYGLSGWKLYAFVIMPSALRRSLPYYSNEVILMLHSTTVAFTA
TVPDILKVARDANSATFLTFQSFGIAALIYLAVTFALVGLFRIAERHWLAFLGPTH
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory