Comparing AO356_27120 AO356_27120 ABC transporter substrate-binding protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P02911 Lysine/arginine/ornithine-binding periplasmic protein; LAO-binding protein from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 4 papers)
48% identity, 97% coverage: 7:257/260 of query aligns to 8:258/260 of P02911
1lstA Three-dimensional structures of the periplasmic lysine-, arginine-, ornithine-binding protein with and without a ligand (see paper)
49% identity, 89% coverage: 27:257/260 of query aligns to 5:236/238 of 1lstA
1lahE Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein (see paper)
49% identity, 89% coverage: 27:257/260 of query aligns to 5:236/238 of 1lahE
1lagE Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein (see paper)
49% identity, 89% coverage: 27:257/260 of query aligns to 5:236/238 of 1lagE
1lafE Structural bases for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein (see paper)
49% identity, 89% coverage: 27:257/260 of query aligns to 5:236/238 of 1lafE
5owfA Structure of a lao-binding protein mutant with glutamine (see paper)
49% identity, 89% coverage: 27:257/260 of query aligns to 2:233/235 of 5owfA
1hslA Refined 1.89 angstroms structure of the histidine-binding protein complexed with histidine and its relationship with many other active transport(slash)chemosensory receptors (see paper)
42% identity, 89% coverage: 28:259/260 of query aligns to 6:238/238 of 1hslA
P02910 Histidine-binding periplasmic protein; HBP from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
42% identity, 89% coverage: 28:259/260 of query aligns to 28:260/260 of P02910
Sites not aligning to the query:
P0AEU0 Histidine-binding periplasmic protein; HBP from Escherichia coli (strain K12) (see 3 papers)
41% identity, 90% coverage: 27:259/260 of query aligns to 27:260/260 of P0AEU0
Sites not aligning to the query:
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
39% identity, 87% coverage: 27:252/260 of query aligns to 5:226/226 of 4zv1A
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
39% identity, 87% coverage: 27:253/260 of query aligns to 5:225/225 of 4zv2A
5ovzA High resolution structure of the pbp noct in complex with nopaline (see paper)
33% identity, 88% coverage: 24:252/260 of query aligns to 1:250/259 of 5ovzA
5otcA Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens c58 in complex with noroctopinic acid. (see paper)
33% identity, 88% coverage: 25:252/260 of query aligns to 1:249/256 of 5otcA
5otaA Structure of the periplasmic binding protein (pbp) noct from agrobacterium tumefaciens c58 in complex with octopinic acid (see paper)
33% identity, 88% coverage: 25:252/260 of query aligns to 1:249/254 of 5otaA
5ot9A Structure of the periplasmic binding protein (pbp) noct from a.Tumefaciens c58 in complex with histopine. (see paper)
33% identity, 88% coverage: 25:252/260 of query aligns to 1:249/254 of 5ot9A
4powA Structure of the pbp noct in complex with pyronopaline (see paper)
33% identity, 88% coverage: 25:252/260 of query aligns to 1:249/254 of 4powA
5itoA Structure of the periplasmic binding protein m117n-noct from a. Tumefaciens in complex with octopine (see paper)
33% identity, 88% coverage: 24:252/260 of query aligns to 1:250/255 of 5itoA
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
33% identity, 87% coverage: 27:251/260 of query aligns to 11:228/229 of 5t0wA
3vv5A Crystal structure of ttc0807 complexed with (s)-2-aminoethyl-l- cysteine (aec) (see paper)
32% identity, 89% coverage: 23:253/260 of query aligns to 10:232/237 of 3vv5A
3vvfA Crystal structure of ttc0807 complexed with arginine (see paper)
32% identity, 89% coverage: 23:253/260 of query aligns to 14:236/241 of 3vvfA
>AO356_27120 AO356_27120 ABC transporter substrate-binding protein
MISLKKLYLVMGLALCTSAVSAKEYSTLRFGVDANYAPFESKAADGSLKGFDIDLGNAIC
AKLSVKCIWVESDFDGLIPGLRAGKFDGILSSMTVTATREKAIDFSNELFSGFTSYVFKK
GSGLNTDVASLKGKTVGYFQGSIQEAYAKAVLDKAGVKIQSYQNQDQVYYDLVAGRLDAS
LQDTLQAQLGFITSPQGAEYEMSPSVESPYLPSKTAIGIAKGNTELKALLDKAIQALHDD
GTYDSIQKQHFGDLNLYSGK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory