Comparing AO356_28705 FitnessBrowser__pseudo5_N2C3_1:AO356_28705 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5lh9D Amine transaminase crystal structure from an uncultivated pseudomonas species in the plp-bound (internal aldimine) form
89% identity, 100% coverage: 2:448/449 of query aligns to 2:448/449 of 5lh9D
5lhaA Amine transaminase crystal structure from an uncultivated pseudomonas species in the pmp-bound form
89% identity, 99% coverage: 3:448/449 of query aligns to 1:446/447 of 5lhaA
6s54A Transaminase from pseudomonas fluorescens (see paper)
51% identity, 96% coverage: 14:445/449 of query aligns to 18:448/453 of 6s54A
6io1B Crystal structure of a novel thermostable (s)-enantioselective omega- transaminase from thermomicrobium roseum (see paper)
44% identity, 97% coverage: 14:448/449 of query aligns to 18:446/448 of 6io1B
6fyqA The crystal structure of a new transaminase from the marine bacterium virgibacillus (see paper)
38% identity, 98% coverage: 9:449/449 of query aligns to 8:439/443 of 6fyqA
6gwiB The crystal structure of halomonas elongata amino-transferase (see paper)
38% identity, 95% coverage: 14:438/449 of query aligns to 16:435/450 of 6gwiB
Q94CE5 Gamma-aminobutyrate transaminase POP2, mitochondrial; AtGABA-T; Gamma-aminobutyric acid aminotransferase 1; Protein HEXENAL RESPONSE 1; Protein POLLEN-PISTIL INCOMPATIBILITY 2; AtPOP2; EC 2.6.1.96 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
36% identity, 93% coverage: 28:445/449 of query aligns to 71:488/504 of Q94CE5
5kquC Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
37% identity, 98% coverage: 5:445/449 of query aligns to 8:451/459 of 5kquC
5kr6B Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
38% identity, 95% coverage: 12:438/449 of query aligns to 17:446/460 of 5kr6B
5kr3A Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
38% identity, 97% coverage: 5:439/449 of query aligns to 9:444/458 of 5kr3A
5kr5A Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
39% identity, 95% coverage: 12:438/449 of query aligns to 13:442/455 of 5kr5A
Sites not aligning to the query:
6s4gA Crystal structure of the omega transaminase from chromobacterium violaceum in complex with pmp (see paper)
35% identity, 97% coverage: 14:447/449 of query aligns to 15:443/453 of 6s4gA
7q9xAAA Probable aminotransferase
35% identity, 97% coverage: 14:447/449 of query aligns to 16:444/455 of 7q9xAAA
4a6tC Crystal structure of the omega transaminase from chromobacterium violaceum in complex with plp (see paper)
35% identity, 97% coverage: 14:447/449 of query aligns to 16:444/455 of 4a6tC
7ypmA Crystal structure of transaminase cc1012 complexed with plp and l- alanine (see paper)
38% identity, 95% coverage: 22:449/449 of query aligns to 25:448/454 of 7ypmA
6g4dB Crystal structure of the omega transaminase from pseudomonas jessenii in complex with plp (see paper)
36% identity, 97% coverage: 14:448/449 of query aligns to 13:445/453 of 6g4dB
6g4fA Crystal structure of the omega transaminase from pseudomonas jessenii in complex with pmp (see paper)
36% identity, 97% coverage: 14:448/449 of query aligns to 13:445/451 of 6g4fA
6g4eA Crystal structure of the omega transaminase from pseudomonas jessenii in complex with plp and 6-aminohexanoate (6-aca) (see paper)
36% identity, 97% coverage: 14:448/449 of query aligns to 13:445/451 of 6g4eA
7ypnD Crystal structure of transaminase cc1012 mutant m9 complexed with plp (see paper)
38% identity, 95% coverage: 22:449/449 of query aligns to 25:448/455 of 7ypnD
3fcrA Crystal structure of putative aminotransferase (yp_614685.1) from silicibacter sp. Tm1040 at 1.80 a resolution
36% identity, 96% coverage: 9:438/449 of query aligns to 13:446/458 of 3fcrA
>AO356_28705 FitnessBrowser__pseudo5_N2C3_1:AO356_28705
MYEHYKTAQKKFWHPMSSSAPANRSKTLIIARGDGNYITDIEGHRMLDGVGGLWNVNVGH
NRPSVKAAIAAQLDELAYYQTFDGIAHPRVFDLAERLTSMFAQENMARVLFSSGGSDAVE
TALKMARQYWIASGEPGRTRFLSLRNGYHGVHVGGTSVGGNGVYHYNHGPLLAGCHLLDT
PWLYRNPWDCRDPEELTAHCIRQLEDQIALLGPQTIAALIAEPVQGAGGVIVPPAHYWKR
LREVCDRHGILLIADEVVTGFGRTGCMLGSRGWGVAPDVLCLAKGITAGYIPMGATVFNQ
RIADAIENGPGFSSVIMHGYTYSGHPTACAAALAVLDIVEAEDLPGNAGKVGAQLLEQLQ
PLTERYAVVGEVRGKGLMIAVDLVADKVTREPLDPANGLASRIAEQARRAGVLVRPIGNK
IVMSPPLTLTSDEAAMMVGALDGALADCR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory