Comparing AO356_28890 FitnessBrowser__pseudo5_N2C3_1:AO356_28890 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
6p3hC Crystal structure of ligu(k66m) bound to substrate (see paper)
48% identity, 98% coverage: 1:351/360 of query aligns to 2:350/352 of 6p3hC
6p3jB Crystal structure of ligu (see paper)
47% identity, 98% coverage: 1:351/360 of query aligns to 7:347/352 of 6p3jB
Sites not aligning to the query:
Q8EJW4 2-methyl-aconitate isomerase; Cis-trans isomerase; EC 5.3.3.- from Shewanella oneidensis (strain MR-1) (see paper)
35% identity, 97% coverage: 3:350/360 of query aligns to 11:392/397 of Q8EJW4
2pw0A Crystal structure of trans-aconitate bound to methylaconitate isomerase prpf from shewanella oneidensis (see paper)
35% identity, 97% coverage: 3:350/360 of query aligns to 6:380/385 of 2pw0A
5k87A Crystal structure of malonate bound to methylaconitate isomerase prpf from shewanella oneidensis (see paper)
35% identity, 97% coverage: 3:350/360 of query aligns to 7:384/389 of 5k87A
2pvzA Crystal structure of methylaconitate isomerase prpf from shewanella oneidensis (see paper)
35% identity, 97% coverage: 3:350/360 of query aligns to 7:382/387 of 2pvzA
2pw0B Crystal structure of trans-aconitate bound to methylaconitate isomerase prpf from shewanella oneidensis (see paper)
35% identity, 97% coverage: 3:350/360 of query aligns to 7:336/341 of 2pw0B
>AO356_28890 FitnessBrowser__pseudo5_N2C3_1:AO356_28890
MQRIPCVLMRGGTSKGPVFLAWDLPVAIAERDELLLNLMGSGHELEIDGIGGGSPQTSKV
AIVSPSLHPDADVDYLFVQVMVSQRRVDTAPNCGNMLCAVGPFAIEQGLVKPSGDLTRVR
IRNLNTGTFVNAEVQTPQGKVSYEGDTAIDGVPGTAAPVQLTFLDAAGSKTGKLFPTGQL
LDLIDGILVTCIDMAMPMMIVEASQLGKRGDESPAELDADKAFLQRLESLRLKAGLAMGL
GDVSDKVIPKPVLVSPAKCGGTIQVRYFMPHNCHRALAITGSIGLATACVTEGSVVAQLL
GNVSEPRLQQVRIEHPSGGIDVVLSYTGEKGETIRASVVRTARRLFSGYVYATASQRLAG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory