Comparing AO356_30035 FitnessBrowser__pseudo5_N2C3_1:AO356_30035 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1worA Crystal structure of t-protein of the glycine cleavage system (see paper)
29% identity, 88% coverage: 8:337/376 of query aligns to 4:327/362 of 1worA
1wopA Crystal structure of t-protein of the glycine cleavage system (see paper)
29% identity, 88% coverage: 8:337/376 of query aligns to 4:327/362 of 1wopA
Sites not aligning to the query:
1wooA Crystal structure of t-protein of the glycine cleavage system (see paper)
29% identity, 88% coverage: 8:337/376 of query aligns to 4:327/362 of 1wooA
Sites not aligning to the query:
3a8iA Crystal structure of et-ehred-5-ch3-thf complex (see paper)
30% identity, 94% coverage: 8:359/376 of query aligns to 4:351/363 of 3a8iA
1wsvA Crystal structure of human t-protein of glycine cleavage system (see paper)
28% identity, 95% coverage: 6:364/376 of query aligns to 3:363/371 of 1wsvA
Sites not aligning to the query:
P48728 Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; EC 2.1.2.10 from Homo sapiens (Human) (see 4 papers)
28% identity, 95% coverage: 6:364/376 of query aligns to 34:394/403 of P48728
Sites not aligning to the query:
4pabB Crystal structure of the precursor form of rat dmgdh complexed with tetrahydrofolate (see paper)
25% identity, 90% coverage: 37:376/376 of query aligns to 474:817/824 of 4pabB
Sites not aligning to the query:
Q63342 Dimethylglycine dehydrogenase, mitochondrial; ME2GLYDH; EC 1.5.8.4 from Rattus norvegicus (Rat) (see 2 papers)
25% identity, 90% coverage: 37:376/376 of query aligns to 511:854/857 of Q63342
Sites not aligning to the query:
Q8GAI3 4-methylaminobutanoate oxidase (formaldehyde-forming); MABO; Demethylating gamma-N-methylaminobutyrate oxidase; Gamma-N-methylaminobutyrate oxidase 1; EC 1.5.3.19 from Paenarthrobacter nicotinovorans (Arthrobacter nicotinovorans) (see paper)
27% identity, 94% coverage: 18:371/376 of query aligns to 458:821/824 of Q8GAI3
Sites not aligning to the query:
Q9UI17 Dimethylglycine dehydrogenase, mitochondrial; ME2GLYDH; EC 1.5.8.4 from Homo sapiens (Human) (see 4 papers)
24% identity, 90% coverage: 37:376/376 of query aligns to 518:861/866 of Q9UI17
Sites not aligning to the query:
Q9AGP8 Dimethylglycine oxidase; DMGO; EC 1.5.3.10 from Arthrobacter globiformis (see 2 papers)
25% identity, 93% coverage: 24:371/376 of query aligns to 480:827/830 of Q9AGP8
Sites not aligning to the query:
1pj6A Crystal structure of dimethylglycine oxidase of arthrobacter globiformis in complex with folic acid (see paper)
25% identity, 93% coverage: 24:371/376 of query aligns to 478:825/828 of 1pj6A
Sites not aligning to the query:
1pj7A Structure of dimethylglycine oxidase of arthrobacter globiformis in complex with folinic acid (see paper)
25% identity, 93% coverage: 24:371/376 of query aligns to 477:824/827 of 1pj7A
Sites not aligning to the query:
3gsiA Crystal structure of d552a dimethylglycine oxidase mutant of arthrobacter globiformis in complex with tetrahydrofolate (see paper)
25% identity, 93% coverage: 24:371/376 of query aligns to 477:824/827 of 3gsiA
Sites not aligning to the query:
3tfjA Dmsp-dependent demethylase from p. Ubique - with cofactor thf (see paper)
22% identity, 87% coverage: 37:364/376 of query aligns to 44:368/369 of 3tfjA
Sites not aligning to the query:
3tfiA Dmsp-dependent demethylase from p. Ubique - with substrate dmsp (see paper)
22% identity, 87% coverage: 37:364/376 of query aligns to 44:368/369 of 3tfiA
Sites not aligning to the query:
Q4FP21 Dimethylsulfonioproprionate demethylase DmdA; EC 2.1.1.269 from Pelagibacter ubique (strain HTCC1062) (see paper)
22% identity, 87% coverage: 37:364/376 of query aligns to 44:368/369 of Q4FP21
Q46337 Sarcosine oxidase subunit alpha; Sarcosine oxidase subunit A; Sarcosine oxidase (5,10-methylenetetrahydrofolate-forming) subunit alpha; Tetrameric sarcosine oxidase subunit alpha; TSOX subunit alpha; EC 1.5.3.24 from Corynebacterium sp. (strain P-1) (see 2 papers)
24% identity, 63% coverage: 6:243/376 of query aligns to 577:834/967 of Q46337
Sites not aligning to the query:
Q50LF0 Sarcosine oxidase subunit alpha; Sarcosine oxidase subunit A; Sarcosine oxidase (5,10-methylenetetrahydrofolate-forming) subunit alpha; Tetrameric sarcosine oxidase subunit alpha; TSOX subunit alpha; EC 1.5.3.24 from Corynebacterium sp. (strain U-96) (see 2 papers)
23% identity, 63% coverage: 6:243/376 of query aligns to 575:832/965 of Q50LF0
Sites not aligning to the query:
3ad7A Heterotetrameric sarcosine oxidase from corynebacterium sp. U-96 in complex with methylthio acetate (see paper)
23% identity, 63% coverage: 6:243/376 of query aligns to 574:831/963 of 3ad7A
Sites not aligning to the query:
>AO356_30035 FitnessBrowser__pseudo5_N2C3_1:AO356_30035
MTHSWRISALAERHRALGSNLEDWNGMGTAWTYDSDLADHHQAIRTRAGLMDVSGLKKVH
YVGPHAESLLQWATTRDIAKLYPGKSVYASMLDEDGKFVDDCIVYRTGPNAFMVVHGAGS
GHEMLVRSSQGRQVAVLFDDDLHDLSLQGPLAVDFLAEHVPGIRQLPYFHHLQTRLFDRP
VMISRTGYTGERGYEIFCKAADAPALWDTILEQGAGLGIIPCAFTALDWLRVESSLMFFP
YDNSQMYPFADQKAGDTLWEMGLDFTVSPDKREFRGAEEHFRLRGQERFKITGVLLEGVR
AAEAGDTLWQGNQQVGVITCGMYSRLSKRSMAIARMSVACSSPGVALQVRGSQESAAVTH
ALPFDDPEKTKRTAKG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory