SitesBLAST – Find functional sites

 

SitesBLAST

Comparing AZOBR_RS00420 FitnessBrowser__azobra:AZOBR_RS00420 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

6st0A Taurine abc transporter substrate binding protein taua from e. Coli in complex with n-(2-acetamido)-2-aminoethanesulfonic acid (see paper)
30% identity, 65% coverage: 29:233/316 of query aligns to 2:210/298 of 6st0A

query
sites
6st0A
V
 
V
T
 
N
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V
A
 
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V
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A
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Y
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x
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K
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A
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A
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D
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T
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F
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E
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D
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R
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x
G
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A
N
 
S
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I
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V
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R
A
 
A
M
 
L
A
 
A
A
 
S
G
 
G
E
 
D
V
 
V
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Q
A
 
-
I
 
I
T
 
G
T
 
N
T
 
L
V
x
G
D
 
S
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S
H
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P
L
 
L
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A
Y
 
V
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A
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A
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S
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Q
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P
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I
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E
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V
L
 
F
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L
L
 
L
D
 
A
S
 
S
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K
H
 
L
G
 
G
G
 
N
-
 
S
D
x
E
G
 
A
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L
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V
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V
R
 
K
D
 
K
A
 
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I
N
 
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P
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E
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D
L
 
L
K
 
I
G
 
G
K
 
K
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R
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I
A
 
A
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V
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P
Y
 
F
G
 
I
G
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S
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x
T
P
 
T
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H
F
 
Y
W
 
S
L
 
L
A
 
L
Y
 
A
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A
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L
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K
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H
N
 
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G
 
G
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I
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K
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P
G
 
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Q
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E
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I
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V
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N
L
 
L
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P
D
 
A
A
 
I
A
 
I
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A
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A
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R
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G
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D
F
 
I
D
 
D
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G
A
 
A
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Y
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V
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x
W
E
 
A
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P
Y
 
A
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V
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N
K
 
A
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L
R
 
-
E
 
E
A
 
K
N
 
D
G
 
G
K
 
K
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V
I
 
L
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D
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S
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E
Q
 
Q
T
 
V
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G
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Q
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I
 
T
I
 
L
D
|
D
T
 
V
L
 
W
A
 
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F
 
V
Q
 
R
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K
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D
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A
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E
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E
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V
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A
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A

6ssyA Taurine abc transporter substrate binding protein taua from e. Coli in complex with 2-aminoethylphosphonic acid (see paper)
30% identity, 65% coverage: 29:233/316 of query aligns to 2:210/298 of 6ssyA

query
sites
6ssyA
V
 
V
T
 
N
V
 
V
A
 
T
M
 
V
S
 
A
G
 
Y
W
x
Q
T
 
T
G
 
S
F
 
A
A
 
E
P
 
P
I
 
A
T
 
K
L
 
V
A
 
A
K
 
Q
E
 
A
T
 
D
G
 
N
I
 
T
F
 
F
-
 
A
K
 
K
K
 
E
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G
 
G
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A
E
 
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R
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K
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D
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A
N
 
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A
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Q
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-
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A
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L
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P
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F
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I
G
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x
T
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T
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H
F
 
Y
W
 
S
L
 
L
A
 
L
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A
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A
L
 
L
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K
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H
N
 
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G
 
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I
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K
I
 
P
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Q
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N
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L
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A
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A
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Q
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R
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A
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x
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A
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A
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V
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N
K
 
A
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L
R
 
-
E
 
E
A
 
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D
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G
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K
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V
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L
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D
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E
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Q
T
 
V
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G
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Q
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W
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G
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A
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I
 
T
I
 
L
D
|
D
T
 
V
L
 
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A
 
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F
 
V
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P
 
K
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D
Y
 
F
I
 
A
Q
 
E
K
 
K
N
 
H
P
 
P
K
 
E
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A
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F
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K
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A
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I
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D
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A

Query Sequence

>AZOBR_RS00420 FitnessBrowser__azobra:AZOBR_RS00420
MRKTSWMAGALAAAVAGLCAVSASAQTKVTVAMSGWTGFAPITLAKETGIFKKNGIEVEI
KKMPTSNRHQAMAAGEVQAITTTVDTHLLYASSGVDVTQVLVLDSSHGGDGIVVRDAVNS
LADLKGKQVAVQYGGVPQFWLAYVLKKNGLSIGEVQTVNLQPSDAANAFVAGQFDAAVTY
EPYLSKVREANGKIIVTSDQTPGVIIDTLAFQPDYIQKNPKVVKAFVDSWFEALDEIKKD
EKKAFEIMARDVNQTPEQFATSAKTVLWYDKAGNVEYLTKTMPTFIKEVQDVMLEAKLIR
KAPPSLDSMTDASFVK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory